Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq188 136 4e-27 seq19 105 6e-18 seq7 93.3 4e-14 seq13 91.5 1e-13 >seq188 Length=611413 Score = 136 bits (150), Expect = 4e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || |||| ||||||||||| || ||||| Sbjct 74148 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAA 74207 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || |||||||||| ||||||| ||| | | | Sbjct 74208 GATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATT 74267 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||| | ||||| || || || || || |||||||| Sbjct 74268 CTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTTAAGGTTTTCAC 74327 Query 35725 AAATATCTGCATT 35737 || ||||||||| Sbjct 74328 GAAGATCTGCATT 74340 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 73692 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 73751 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| || ||||||||| | || | || |||||||||| |||||| ||| | | | Sbjct 73752 TATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATT 73811 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||| | ||||| || || || |||| || ||||| Sbjct 73812 CTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 73871 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 73872 GAAGATCTGCAT 73883 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || |||| ||||||||||| || ||||| Sbjct 73920 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAA 73979 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || |||||||||| |||||| ||| | | Sbjct 73980 GATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 74039 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||| | ||||| || || || |||| || ||||| Sbjct 74040 CTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 74099 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 74100 GAAGATCTGCAT 74111 >seq19 Length=57279966 Score = 105 bits (116), Expect = 6e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || ||||||||||| || || || Sbjct 4087991 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAA 4087932 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||||| || ||||| ||| |||||| ||| | | | Sbjct 4087931 GATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATT 4087872 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||||| ||||| || || || |||| || ||||| Sbjct 4087871 CTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 4087812 Query 35725 AAATATCTGCATTCTG 35740 || ||||||||| || Sbjct 4087811 GAAGATCTGCATTGTG 4087796 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 4088447 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 4088388 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||||| || ||||| ||| |||||| ||| | | | Sbjct 4088387 GATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATT 4088328 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||||| ||||| || || || || | || ||||| Sbjct 4088327 CTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 4088268 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 4088267 GAAGATCTGCAT 4088256 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || ||||||||||| || || || Sbjct 4088219 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAA 4088160 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||||| || ||||| ||| |||||| ||| | | Sbjct 4088159 GATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTT 4088100 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || || | || ||||| Sbjct 4088099 CTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTCAC 4088040 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 4088039 GAAGATCTGCAT 4088028 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || ||||||||||| || || || Sbjct 4088675 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAA 4088616 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||||| || ||||| ||| |||||| ||| | | Sbjct 4088615 GATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTT 4088556 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || || | || ||||| Sbjct 4088555 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 4088496 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 4088495 GAAGATCTGCAT 4088484 >seq7 Length=173684459 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 |||||||| | || | ||| |||||||||||||||||| || | || || | | Sbjct 2561105 CTCAACACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCATCCA 2561164 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||| ||||| || ||||| |||| | ||||| || | ||||| | ||||| Sbjct 2561165 TCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTA 2561224 Query 35642 TCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGAT 35700 ||| ||| ||| || || | | || | | || || | ||| ||||| | |||||| Sbjct 2561225 TCCTGGAT-TTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGCGTGAT 2561283 Query 35701 CGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || || ||||| | |||||||| || |||||||| ||| Sbjct 2561284 GGTCTT-CCCGTAAGGGTTTTCACGAAGATCTGCATCCTG 2561322 >seq13 Length=143360832 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| || |||||||| | || ||| |||||||||||||||||| || | Sbjct 88039104 CCCCCACGAAATCTCAACACAAGGTGAGGAGTAGACTCCTTTTGAATGTTGTAGTCAGAT 88039045 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | ||||| || | |||| Sbjct 88039044 AAAGTCCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 88038985 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||| ||| ||| |||||| || | | || | | || || | ||| || Sbjct 88038984 ATTCCTTCCTTATCCTGGAT-TTTTGCTTTTACATTTTCTATTGTATCCGAGGGTTCAAC 88038926 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | | |||| || || ||| | | ||||||| || |||||||| ||| Sbjct 88038925 CTTGAGCATGATGGTCTTCCCCATAAGGGTTTTCATGAAGATCTGCATCCTG 88038874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450775337224280