Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq188 141 9e-29 seq7 105 7e-18 seq19 96.9 4e-15 seq13 93.3 4e-14 seq11 91.5 1e-13 seq17 87.8 2e-12 >seq188 Length=611413 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| |||| ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 74113 CCACCTCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 74172 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| ||||| ||||| |||| | |||||| ||||| || Sbjct 74173 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGG 74232 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || ||| ||||| || | ||||| | ||||| Sbjct 74233 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 74292 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| || || ||||| ||||| ||||| || |||||| Sbjct 74293 TCGAGGGTGATGGTCTTGCCAGTTAAGGTTTTCACGAAGATCTGCATT 74340 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| |||| ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 73885 CCACCTCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 73944 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| ||||| ||||| |||| | |||||| ||||| || Sbjct 73945 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGG 74004 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | ||||| | ||||| Sbjct 74005 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 74064 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| | || || ||||| || ||||| Sbjct 74065 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 74111 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || |||| || | ||| || ||||| ||||| || |||||||||||| Sbjct 73657 CCTCCCCTCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 73716 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| ||||| || Sbjct 73717 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGCTGGTCGGGGGGG 73776 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | ||||| | ||||| Sbjct 73777 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 73836 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| | || || ||||| || ||||| Sbjct 73837 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 73883 >seq7 Length=173684459 Score = 105 bits (116), Expect = 7e-18 Identities = 155/218 (71%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||| |||||| ||||| || || || |||||||||||||||||||| | || Sbjct 2561102 AGTCTCAACACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCAT 2561161 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || || || ||||| |||||||||| | |||||||| || || || ||||| Sbjct 2561162 CCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 2561221 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || ||||| ||| || || | ||| || || | ||| || ||||| || Sbjct 2561222 TTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGCGTG 2561281 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | ||||| ||||| || ||||| Sbjct 2561282 ATGGTCTT-CCCGTAAGGGTTTTCACGAAGATCTGCAT 2561318 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || |||| || | ||| || ||||| ||||| || |||||||||||| Sbjct 24645099 CCTCCCCTCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 24645040 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||||| ||||| |||| | |||||| || || || Sbjct 24645039 AGGGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 24644980 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | ||||| | ||||| Sbjct 24644979 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 24644920 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| | || || ||||| || ||||| Sbjct 24644919 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 24644873 >seq19 Length=57279966 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| || ||||| || ||||| || || || ||||||||||| | Sbjct 4088026 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 4087967 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| || || || | | |||||| ||||| || Sbjct 4087966 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGA 4087907 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | |||||| | ||||| Sbjct 4087906 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACC 4087847 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || | || ||||| || ||||| | || || ||||| || |||||| || Sbjct 4087846 TCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTGTG 4087796 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| || ||||| || ||||| || || || ||||||||||| | Sbjct 4088254 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 4088195 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| || || || | | |||||| ||||| || Sbjct 4088194 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGA 4088135 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | ||||| | ||||| Sbjct 4088134 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4088075 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || || || | || || ||||| || ||||| Sbjct 4088074 TCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4088028 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| || ||||| || ||||| || || || ||||||||||| | Sbjct 4088482 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 4088423 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| ||||| || | | |||||| || || || Sbjct 4088422 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 4088363 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | |||||| | ||||| Sbjct 4088362 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACC 4088303 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 4088302 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4088256 >seq13 Length=143360832 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 134498 TCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGA 134557 || |||||| ||||| | || || |||||||||||||||||||| | || | Sbjct 88039093 TCTCAACACAAGGTGAGGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCGTCC 88039034 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 || || || || ||||| |||||||||| | |||||||| || || || ||||| || Sbjct 88039033 ATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 88038974 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || || |||||| ||| || || | ||| || || | ||| || | ||| | || Sbjct 88038973 ATCCTGGATTTTTGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGCATGAT 88038914 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || | | ||||| | ||| || ||||| Sbjct 88038913 GGTCTTCCCCATAAGGGTTTTCATGAAGATCTGCAT 88038878 >seq11 Length=87554214 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || ||||| || || || ||||||||||| | |||| Sbjct 46295922 AGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCTG 46295863 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||||||||| | ||||||| || |||||| || ||||| ||||| || Sbjct 46295862 CTGTCCTCCAGCTGTTTGCCCACGAAAATCAGACACTGCTGGTCAGGCGGGATGCCCTCC 46295803 Query 134616 TTTTCTTGAATTTTTTGTTTGAC 134638 || ||||| || || |||||| Sbjct 46295802 TTGTCTTGGATCTTGGCTTTGAC 46295780 >seq17 Length=85008467 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||||| || ||||||||||| |||||||||| || |||||| || ||| | ||||||||| Sbjct 28824670 GAGTCCTCCAGCTGTTTGCCAGCAAAAATCAGACACTGCTGGTCAGGCAGGATGCCTTCT 28824729 Query 134616 TTTTCTTGAATTTTTTGTTTGAC 134638 || ||||| ||||| |||||| Sbjct 28824730 TTGTCTTGGATTTTGGCTTTGAC 28824752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505377925047320