Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq15 129 8e-25 seq1 118 1e-21 seq3 116 5e-21 seq119 93.3 6e-14 >seq15 Length=109054052 Score = 129 bits (142), Expect = 8e-25 Identities = 244/355 (69%), Gaps = 7/355 (2%) Strand=Plus/Minus Query 37348 CCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATTC 37407 || || || ||||| ||| || ||||| || || |||| | | ||| ||||| | Sbjct 46625698 CCAGTAGAACCAAAACCTCCTGCACCTCTTTCAGTGTCATCCAAAACTTGAACTTCTTCT 46625639 Query 37408 AGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTATT 37467 | || |||||| | || |||| | | || ||||| || ||||| || ||| | || | | Sbjct 46625638 ATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCTGTCACCCTTTTTGACT 46625579 Query 37468 TTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTCA 37527 | ||| || ||| ||| ||| | || | || |||| ||| || |||||||||||| Sbjct 46625578 TCAAACTTTTCTTTGCCAAAATTAAACAATACAACACCAACATTTCCTCTATAATCTTCA 46625519 Query 37528 TCGATTACTCCGCCTCCTACATCAAT---ACCTTTTAGAGACAAACCCGATCTAGGAGCT 37584 || || || || |||| ||||| || |||| || ||| || || | |||||| Sbjct 46625518 TCTATAACACCAGCTCCCACATCTATGAAGTATTTTGCAGCCAAGCCAGAACGTGGAGCT 46625459 Query 37585 ATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATTGTCTT 37644 ||||||||||| || || | || ||| |||| || ||||| | ||| || ||| Sbjct 46625458 ATTCTTCCATAGCATCCAGAAGGAAGAGCTATCTGAATGTCCGTTTTCA-CAA-TGGCTT 46625401 Query 37645 TCTCC--AGGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCCGCGGC 37697 ||||| ||| | | ||||||||| || || || || | || || |||||||| Sbjct 46625400 TCTCCATAGGTGGTACGGTATAATCATAAGCACTGTACAGGTCGTAGCCCGCGGC 46625346 >seq1 Length=194850757 Score = 118 bits (130), Expect = 1e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || ||||| ||||| ||||| || || || || || || ||||| | ||| Sbjct 145049073 TGAAATTCTCCTGATAAGACTCTGCGAGTATAGATGTTGCTAGTGTACGGTTCAATGGAT 145049014 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| ||||| || ||||||||||| ||||||||||| || || | | |||||| Sbjct 145049013 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTTGGCATCGGGGCAAGAAGTAAACTG 145048954 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 145048953 TTTCTTATACCAT 145048941 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| |||||||||||||| | || ||||| |||| | | | Sbjct 145038468 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACGCTGT 145038409 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| || ||||| | ||||| ||||||| || Sbjct 145038408 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATATCTAAATGCCAAGGC 145038349 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 145038348 TCCAGGTAAATAGC 145038335 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| ||||||||||| |||||||| |||||||| ||||||||||||||||| ||| Sbjct 145038908 TCAAATTCCTCTCCCCAAACTTCATCCAAACCAGGACACTCATTTGGACACATCAAGGAC 145038849 Query 69577 CA 69578 || Sbjct 145038848 CA 145038847 >seq3 Length=155691105 Score = 116 bits (128), Expect = 5e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | || || ||||| |||||||||||||| ||||| | ||| || Sbjct 117739710 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATCAGACCTCTCTTCTTT 117739769 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 117739770 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAGGCC 117739829 Query 39761 AC 39762 || Sbjct 117739830 AC 117739831 Score = 96.9 bits (106), Expect = 5e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||||||||||||| || ||||||||||| || |||||||| || || ||||| |||| Sbjct 117747332 CCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGATAA 117747391 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATA 40109 ||||||| ||||| | ||| | | | ||||||| | || ||| ||||||| Sbjct 117747392 AATATTTCTCATCTGATGTAAGTCTGTTCCAGTGAGGGAGATCCTTTGATA 117747442 >seq119 Length=1067461 Score = 93.3 bits (102), Expect = 6e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||||| | || || || || || || || ||||| || || || || | Sbjct 31901 CCTCATCCCTGCTAATAAGCTCATTGGAGAACGTAAGCCCGGGCATCAGTCCTCGTTTCT 31842 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| || || | |||||||| ||||| |||||||||||||| || || ||||| | Sbjct 31841 TGAGCCAGAAAATCGACGCAAAAGAACCAGAGAAGAAGATGCCTTCCACCGCAGCAAAGG 31782 Query 39759 CAAC 39762 | || Sbjct 31781 CTAC 31778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686880971607240