Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq11 91.5 1e-13 >seq11 Length=87554214 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| |||| || | || || ||||| || || |||||||| Sbjct 46295933 TGCCGCCACGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCG 46295874 Query 27079 TCATGTTGC-GCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | ||| ||| ||| || |||||||| || || |||| |||| ||| || || ||| Sbjct 46295873 ACAGGGTGCTGCT-GTCCTCCAGCTGTTTGCCCACGAAAATCAGACACTGCTGGTCAGGC 46295815 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||| || || ||||||| ||| | | || | |||| |||| | Sbjct 46295814 GGGATGCCCTCCTTGTCTTGGATCTTGGCTTTGACATTCTCGATGATGTCCTGGGCT-CG 46295756 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCA 27246 || || || | || | ||||||||||| || ||||||||||| |||| Sbjct 46295755 ACCTCGAGGGCGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCA 46295707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424917615223992