Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq403 293 9e-75 seq2 214 7e-51 seq218 116 1e-21 seq239 113 2e-20 seq129 105 2e-18 seq4 96.9 1e-15 >seq403 Length=190959 Score = 293 bits (324), Expect = 9e-75 Identities = 323/407 (79%), Gaps = 20/407 (5%) Strand=Plus/Plus Query 22363 TTCTCAATAAACCCTTTAGGGAAAT--AGGCCAGGTTTTCACCGTAACACGCCACATCTT 22420 |||||||||||||||||||| |||| | || | | |||||||||||||| |||||||| Sbjct 7588 TTCTCAATAAACCCTTTAGGAAAATTTAACCCCGTTGTTCACCGTAACACGTCACATCTT 7647 Query 22421 GCGAATA-TATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAA 22479 ||||| | ||||||||| ||||| || |||||||| || |||||||||| | ||||||| Sbjct 7648 GCGAAGAATATGTGTAGCAACTGTGGGCAATCGTCGGGGAATTCACTCCACAACGATGAA 7707 Query 22480 AACGTTT-CAGTTTGCTCATGG-AAAACGGTGTAACAAGGGTGAACACTATCCCATATCA 22537 || | | ||||||||||||| ||||||||||||||| ||||||||||||||| |||| Sbjct 7708 CACCTGTGCAGTTTGCTCATGCTAAAACGGTGTAACAACGGTGAACACTATCCCGGATCA 7767 Query 22538 CCAGCTCACC--GTCTTTCA-TTGCCATACGGAATTCCGGATGAGCAT-TCATCAGGCGG 22593 ||||| || | || ||||| |||| | || ||| ||| ||||| ||| |||| || || Sbjct 7768 CCAGCCCAGCGTGTTTTTCATTTGCTAGACTGAACTCCAGATGAACATGACATCTGGTGG 7827 Query 22594 GCAAGA-ATGTGAATA-AAGGCCGGATAAAACTT-GTGCTTATTTTTC-TTTACGGTCTT 22649 | || | |||| | || ||| |||||| |||| |||||| || ||| ||| || |||| Sbjct 7828 GAAAAATATGTCATTATGGGGCGGGATAACACTTGGTGCTTCTTATTCTTTTTCGATCTT 7887 Query 22650 TAAAAAGGCCGTAATATCCA-GCTGAACGGTCTG-GTTATAGGTAC-ATTGAGCAACTGA 22706 | | ||||| ||||||||| ||||| ||||| |||||| | || | |||| |||| Sbjct 7888 TTATAAGGCTCTAATATCCATGCTGATACGTCTGAGTTATAAGGACTGTGGAGCCTCTGA 7947 Query 22707 -CTGAAATGCCTCAAAAT-GTTCTTTACGA-TGCCATTGG-GATATA 22749 |||| |||| ||||||| ||||||| || ||||||||| |||||| Sbjct 7948 CCTGATATGCGTCAAAATGGTTCTTTTGGACTGCCATTGGCGATATA 7994 >seq2 Length=174332312 Score = 214 bits (236), Expect = 7e-51 Identities = 188/229 (82%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 22177 CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGC 22236 ||| ||||||||||||||||| ||| |||||||||||||||||| || ||||||||||| Sbjct 5952973 CTGTCGACATGGAAGCCATCAAAAAAAGCATGATGAACCTGAATCTCCCGCGGCATCAGC 5953032 Query 22237 ACCTTGTCGCCTTGCGTATAATATT-TGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTC 22295 ||||||||| ||||||||||||||| | || || | || || || | | |||||| Sbjct 5953033 ACCTTGTCGACTTGCGTATAATATTAAACACAGGGCGTCCTCGCGGACGGATACGTTGTC 5953092 Query 22296 CATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGAT-TGGCTGAGACGA 22354 |||| |||||||||| ||||||| |||||||||||||| |||||||| |||||| |||| Sbjct 5953093 CATAGTGGCCACGTTCAAATCAACACTGGTGAAACTCA-CCAGGGATACGGCTGACACGA 5953151 Query 22355 AAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCA-GGTTTTCAC 22402 ||||||||||| | || ||| | ||||||||||| ||||| ||| Sbjct 5953152 GCAACATATTCTCTGTGAAGACTTCCGAGAAATAGGCCACGGTTTACAC 5953200 >seq218 Length=491810 Score = 116 bits (128), Expect = 1e-21 Identities = 152/204 (75%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 22458 GTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATG-GAAAACGGTGTAACAAG 22516 ||| ||||||||||||||| ||| |||||| || |||||| | || ||||| |||||| Sbjct 311912 GTAATCACTCCAGAGCGATCAAACCGTTTCCGTGTGCTCAGGCCAATACGGTTGAACAAG 311971 Query 22517 GGTGAACACTATCCCATATCA-CCAGCTCACCGTCTTTCATTGCCATACGGAATTCCGGA 22575 ||| ||||||||| ||| ||| |||| || |||| || ||| | ||| ||| | || Sbjct 311972 GGTTAACACTATCACATTTCATCCAGGTCCCCGTTCCTCCTTGTCTGTCGGTATTTCCGA 312031 Query 22576 T-GAGCATTCATCAGGCGGGCAAGAATGTGAATAAAGG-CCGGATAAAACTTGTGCTTA- 22632 | | || ||| || ||| |||||| ||| | ||||| || ||||| |||||| || Sbjct 312032 TAAAACAATCAGCAAGCGAGCAAGATTGTATACAAAGGCCCCAATAAAGTTTGTGCCTAG 312091 Query 22633 TTTTTCTTTACGGTCTTTAAAAAG 22656 |||||| || | |||||| ||| Sbjct 312092 TTTTTCGTTTTAGACTTTAACAAG 312115 >seq239 Length=427691 Score = 113 bits (124), Expect = 2e-20 Identities = 106/134 (79%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 22462 TCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGA 22521 |||||| ||||| | | ||| || |||| ||||||||| || ||| ||||||||| Sbjct 376186 TCACTCGAGAGCCAACACAACTTTGCAGTGGTCTCATGGAATT-GGCGTATCAAGGGTGA 376244 Query 22522 ACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGGAATTCCGGATGAGCA 22581 ||||||||||||||||| |||| |||||||||| ||| | || || ||| |||||||| Sbjct 376245 GCACTATCCCATATCACCGGCTCTCCGTCTTTCAGTGCTACACCGATCTCCAGATGAGCA 376304 Query 22582 TTCATCAGGCGGGC 22595 |||||| || ||| Sbjct 376305 ATCATCACGCCGGC 376318 >seq129 Length=1087329 Score = 105 bits (116), Expect = 2e-18 Identities = 148/190 (78%), Gaps = 16/190 (8%) Strand=Plus/Minus Query 22188 GAAGCCATCACAAACGGCATGATGAAC-CTGAATCGCCAGCGG-CATCAGCACCT-TGTC 22244 ||| | ||| ||||||||||||| | ||||| ||||||||| |||||||||| |||| Sbjct 952791 GAATCTATCTGAAACGGCATGATGGAGACTGAAGCGCCAGCGGGCATCAGCACCAATGTC 952732 Query 22245 GCCTT-GCGTATAATATTTGCCCATGGT-GAAAACGGGGGCG-AAGAAGTTGTCCATATT 22301 | ||| | |||||| ||||||| || | ||||||||||||| |||| | ||||||| | Sbjct 952731 GACTTTGTGTATAAAATTTGCCAATTGACGAAAACGGGGGCGAAAGAGATAGTCCATAAT 952672 Query 22302 G-GCCACGTTTAAA-TCAAAACT---GGTGA-AAC-TCACCCAGGG-ATTGGCT-GAGAC 22352 | | | | || ||| || | | | ||||| ||| ||| |||||| ||||||| ||||| Sbjct 952671 GAGGCTCTTTCAAACTCCAGAATTTGGGTGACAACTTCAGCCAGGGAATTGGCTGGAGAC 952612 Query 22353 GAAA-AACAT 22361 |||| ||||| Sbjct 952611 GAAACAACAT 952602 >seq4 Length=91394100 Score = 96.9 bits (106), Expect = 1e-15 Identities = 68/74 (92%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 22123 AATTACGCCCCGCCCTGCCACTCA-TCGCAGT-ACTGTTGTAATTCATTAAGCATTC-TG 22179 |||||||| ||| ||||||||||| ||||||| ||||||||| |||||||||||||| || Sbjct 84736172 AATTACGCACCGGCCTGCCACTCAGTCGCAGTCACTGTTGTACTTCATTAAGCATTCATG 84736113 Query 22180 CCGACATGGAAGCC 22193 |||||||||||||| Sbjct 84736112 CCGACATGGAAGCC 84736099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184437701296038