Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq107 154 1e-32 >seq107 Length=1146635 Score = 154 bits (170), Expect = 1e-32 Identities = 481/738 (65%), Gaps = 20/738 (3%) Strand=Plus/Minus Query 111563 AAATAGCAACATCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAATTCAAAGTCAT 111622 ||| ||| | ||||| || |||| ||||| || | || | || | ||| || | Sbjct 529597 AAACAGCCATCTCCATTTTAATAGTTGGATGTGGGTTGTACCCTTTCATCTGAAAATCTT 529538 Query 111623 CAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGGG 111682 |||| ||||| ||||| ||||| |||| | |||| || || || || || Sbjct 529537 CAGCTTTGAAATCATCAATCGTCTCAACTTTTCGAAGA-TTTTGAGCTTCGGGAAAGGTC 529479 Query 111683 TAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCAT 111742 | || | ||| |||||| || | ||||| ||||| || | |||| ||| |||| Sbjct 529478 TTGGTTCTCGCTGAAGCTGAGTTTTCAGAGGCTCAATGTGGTTCAGGTAAATATGGGCAT 529419 Query 111743 CTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTATG 111802 |||| | | ||| | || || | |||| || || |||| || | |||||||| | Sbjct 529418 CTCCCAAAGTATGTACAAAATCACCTGGCTTCAGGCCGGTGACATGCACGATCATGTAGG 529359 Query 111803 TGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTT 111862 |||| | || || || ||||| || ||||| || |||| ||| |||||||| |||| Sbjct 529358 TGAGCAAGGCATAGCTGGCGATGTTGAAGGGCACGCCCAGGCTCATGTCTCCCGACCTTT 529299 Query 111863 GATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAAG 111922 | || ||||| || || || | | ||| || || || || || |||| || | Sbjct 529298 GGTACAGCTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAGGGCATGGCATG 529239 Query 111923 GAGGCAATGCCATCCCAT-----TCATAAAGGGTCCCCATGCACACATGATCATCCTTCT 111977 | |||| |||||| | || | ||| || ||||||||||| || ||||| Sbjct 529238 GGGGCAGCGCCATCAGAGGAAGGTCTTT--GGGATTTCAGGCACACATGATGATTCTTCT 529181 Query 111978 GCTGTAGCGATTATGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTACC 112037 | | | || || ||| | || || ||| || ||||||| |||| ||| Sbjct 529180 GTCATCAGGGTTGGTTTTGATGGTATCGATCACTTTCTGCAGTTGGTCTACTCCTTGACC 529121 Query 112038 AGTATAATCCG---CCTGACATCCAGTGTATGTTGCCCCATAGTGTCTCCATTGGAATCC 112094 | |||||| | ||| | | ||||| ||| ||| | || ||||| ||||| || Sbjct 529120 TGAATAATCTGAGTCCTTATCTT---TGTATTCTGCACCAAAATGCCTCCACTGGAAGCC 529064 Query 112095 ATAAATAGGCCCCAGATCTCC--CGGGGCTGTATCTGGA-AATTGCTCTCTATTCAACAA 112151 ||||| || ||||| || || | | ||| |||| ||| | ||| | ||| || Sbjct 529063 ATAAACTGGACCCAGGTCCCCTTCTTGTCTGG---TGGAGAATCCCAGTCTGTCCAAAAA 529007 Query 112152 ATCACTTCTAATATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATT 112211 || | || | || ||| || |||||||| || || || | ||| | ||||| Sbjct 529006 GTCTCGGGATGCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTAGCATT 528947 Query 112212 TGTGGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTT 112271 ||||||||| | |||||||| ||||| || |||| || || |||||| | || | ||| Sbjct 528946 TGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAGACACCCTTCCAGAATACACGTTT 528887 Query 112272 AGTAGTTAGCAGTGGaaa 112289 || || ||||| ||||| Sbjct 528886 GGTTGTCAGCAGAGGAAA 528869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391930118271283