Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq19 104 3e-17 seq14 104 3e-17 seq119 86.0 7e-12 >seq19 Length=57279966 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 41553593 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 41553652 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| ||||| ||| ||||| ||||||||||||||||| | | Sbjct 41553653 CCAATGGGCTGTAAGAGGTTCAGGTTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 41553712 Query 152149 ATCGT 152153 || || Sbjct 41553713 ATGGT 41553717 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| ||||||||||||| || | ||||| || || Sbjct 41553593 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 41553652 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| |||||||||||||| ||| |||||||| || |||||||| |||| | Sbjct 41553653 CCAATGGGCTGTAAGAGGTTCAGGTTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 41553712 Query 117425 ATCGT 117429 || || Sbjct 41553713 ATGGT 41553717 >seq14 Length=163896628 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 12138952 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGTCGAGTCCCAAACTGA 12139011 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||||| ||||||||||| ||| Sbjct 12139012 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAGTTCACA 12139071 Query 117425 ATCGT 117429 || || Sbjct 12139072 ATTGT 12139076 >seq119 Length=1067461 Score = 86.0 bits (94), Expect = 7e-12 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||| ||||| || | ||||| || |||| ||| || ||||| ||||| || ||||| Sbjct 31899 TCATCCCTGCTAATAAGCTCATTGGAGAACGTAAGCCCGGGCATCAGTCCTCGTTTCTTG 31840 Query 74832 AACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || || | | || ||| ||||| ||||||||||||||| || |||||||| Sbjct 31839 AGCCAGAAAATCGACGCAAAAG-AACCAGAGAAGAAGATGCCTTCCACCGCAGCAAAGGC 31781 Query 74891 GACAAGGCGTT 74901 || | ||||| Sbjct 31780 TACGACGCGTT 31770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547193830911800