Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq15 96.9 4e-15 seq12 96.9 4e-15 >seq15 Length=109054052 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 |||||| ||||||||||| || |||| | || || ||||| | ||| || ||| Sbjct 46625647 ACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCTGTCACCC 46625588 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || || || | ||| || || | ||||||||| || | | ||| | |||||| || Sbjct 46625587 TTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAATACAACACCAACATTTCCTCTA 46625528 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 |||||| |||||| ||||| || || ||||| || || | || ||||| || || Sbjct 46625527 TAATCTTCATCTATAACACCAGCTCCCACATCTATGAAGTATTTTGCAGCCAAGCCAGAA 46625468 Query 22815 CTAGGAGATATTCTTCCATATAATCC 22840 | |||| |||||||||||| |||| Sbjct 46625467 CGTGGAGCTATTCTTCCATAGCATCC 46625442 >seq12 Length=155355395 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 32670 GCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATA 32729 || || |||| || ||| | |||||||| | |||||| | || || | || || || Sbjct 66863387 GCTTTATGGTGGTACTTTGTATCTAAAGGAGTTGAATATTTGGACACAGTGTTTTTTATC 66863328 Query 32730 ATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTT 32789 | | |||||| || |||||| || | || ||||||||||| | |||||||||| Sbjct 66863327 CTTCGGAAGAAAAACAATCAAGTTTCTTTCCTTCATGTATACCACCACTGTACCATGTTT 66863268 Query 32790 ACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 || || | ||||| |||||||||||| ||||||| ||||| Sbjct 66863267 ACATTGTGGTGGATTGGGATTAAATGGGTTGCAGGGGGACA 66863227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603156363637840