Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq1 170 3e-37 >seq1 Length=194850757 Score = 170 bits (188), Expect = 3e-37 Identities = 613/946 (65%), Gaps = 17/946 (2%) Strand=Plus/Plus Query 13608 GACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAA-AGACAGGGGGTATCTCGT 13666 |||||||| |||||||| |||||| || ||| | || || | | | ||| | || Sbjct 62872144 GACTACGTCAACATGACCAGTGACTGCACCGCTTTCATCAAGAGGC-GCAGATATATTGT 62872202 Query 13667 GAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCA 13726 | ||| || || ||||||| |||| |||||| || || || || ||| | || || Sbjct 62872203 GGAGCCGCTAAGTAAAGAAGAGGCGGAGTATCCCATAGCTTATTCTATTGTGGTTCATCA 62872262 Query 13727 CAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTG 13786 ||| ||||| ||| | || | ||| |||||||||||||| || ||||| |||| || Sbjct 62872263 CAAAATCGAAATGCTTGACAGGCTCTTGAGGGCCATCTACATGCCTCAGAATTTCTATTG 62872322 Query 13787 CGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAG 13846 | | ||||||||| ||||| | || || | | ||| || | | || Sbjct 62872323 CATTCACGTGGACAAAAAGTCAGAGGAATCTTTTCTAGCTGCGGTCATGGGCCTGGCGTC 62872382 Query 13847 GTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGAC-GTGGTGTACGGCTCCTGGA 13905 || ||| |||||| | ||||| | |||| | ||| ||||| || | ||| |||| Sbjct 62872383 CTGTTTCAGTAACGTCTTCGTGGCCAGTCAGCTGGA-GACTGTGGTCTATGCCTCGTGGA 62872441 Query 13906 GTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGA 13965 |||| || ||||||||||||| ||||||| |||||| || || | |||| Sbjct 62872442 GTCGGGTTCAGGCCGACCTCAACTGCATGAAGGACCTCTACAAGATGAACGCGGACTGGA 62872501 Query 13966 GGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGC 14025 |||| || ||||||| ||||| ||||| ||||| | || ||||||||||| || | | Sbjct 62872502 AGTACTTGATCAACCTTTGCGGTATGGATTTCCCTATTAAAACCAACCTGGAAATAATCC 62872561 Query 14026 GGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACA 14085 || ||| ||| | | ||| | ||| |||||| | |||| | ||||| | | | Sbjct 62872562 GGAAGCTCAAGTCGTTAATGGGCGAAAACAACCTGGAAACCGAGAGGATGCCAGCCAATA 62872621 Query 14086 AGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCG---GCGGCGTGGTGGTCAACA 14142 || | | | | |||| | | ||| | | || || ||| | | |||| Sbjct 62872622 AG--GAAGAG-AGGTGGAAAAAG--CGTTAT-GTCATCGTGAACGGAAAGCTCACAAACA 62872675 Query 14143 CCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACT 14202 | || | |||||| | || || ||| | || || || |||| | ||| |||| Sbjct 62872676 CAGGGACCGCCAAGGCGCGCCCTCCCCTCCAAACTCCTATTTTCTCGGGCAGCGCCTACT 62872735 Query 14203 TTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCA 14262 ||| ||||| |||||| ||| | ||| || || | || | | | | Sbjct 62872736 TTGTGGTCAGTAGGGAGTATGTGAGGTACGTGCTGGAGAATGAAAGCATCCAGAAGTTTA 62872795 Query 14263 TGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAA 14322 || | ||| ||||||| |||||||| || ||| | || |||||||| | || || | Sbjct 62872796 TGGAGTGGGCACAGGACACCTACAGCCCGGATGAGTATCTCTGGGCCACTATCCAAAGGA 62872855 Query 14323 TGTACGGGACGCCCGGGGGGATC--CCCGTTCACGTCAAGTACGACACCTCGGACATGTG 14380 | | ||| | | ||| || || | | |||||| ||| || |||||| | Sbjct 62872856 --TCCCGGAAGTGCCGGGCTCTCTGTCCTTGAGCCACAAGTATGACTTGTCCGACATGCG 62872913 Query 14381 GGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCT 14440 || | |||||| ||||||||||| |||| || || ||| | || || || | Sbjct 62872914 CGCGGTTGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGCGATGTTTCCAAGGGCGCGCC 62872973 Query 14441 GTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGT 14500 |||||||| || | || ||||||| | | || | ||| | || || | |||||| | Sbjct 62872974 CTACCCGCCCTGTAATGGGGTCCACGTGCGCTCCGTGTGCGTGTTTGGAGCTGGCGACTT 62873033 Query 14501 GAAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 ||| ||| || | || | ||| |||| ||||||||||| ||| Sbjct 62873034 GAACTGGATGCTGCGCAAGCACCACTTGTTTGCCAACAAGTTTGAC 62873079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658712512828160