Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq107 352 2e-92 seq9 147 2e-30 seq13 116 3e-21 seq11 87.8 1e-12 >seq107 Length=1146635 Score = 352 bits (390), Expect = 2e-92 Identities = 491/687 (71%), Gaps = 1/687 (0%) Strand=Plus/Minus Query 29839 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTA 29898 |||||||| ||| || || | || |||||||| ||||| || || | || | |||||| Sbjct 529488 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGAGTTTTCAGAGGCTCAATGTGGTTCAGGTA 529430 Query 29899 GACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29958 | || || ||||||| | || ||||| || || || | || |||||||| || | Sbjct 529429 AATATGGGCATCTCCCAAAGTATGTACAAAATCACCTGGCTTCAGGCCGGTGACATGCAC 529370 Query 29959 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 30018 |||||||| ||||| | | |||||||||||||| ||||| || || || | |||||| Sbjct 529369 GATCATGTAGGTGAGCAAGGCATAGCTGGCGATGTTGAAGGGCACGCCCAGGCTCATGTC 529310 Query 30019 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 30078 |||||||| ||||| ||||| || || ||||| || | |||||| ||||| || | Sbjct 529309 TCCCGACCTTTGGTACAGCTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAG 529250 Query 30079 GGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGAT 30138 ||| ||||| || || || ||||| || | ||||||||| || ||||| |||| ||| Sbjct 529249 GGCATGGCATGGGGGCAGCGCCATCAGAGGAAGGTCTTTGGGATTTCAGGCACACATGAT 529190 Query 30139 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 30198 ||| | ||||| || |||||| | ||||| || | | || ||||| || || || Sbjct 529189 GATTCTTCTGTCATCAGGGTTGGTTTTGATGGTATCGATCACTTTCTGCAGTTGGTCTAC 529130 Query 30199 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTG 30258 || || || || |||| | | || |||| ||||| || |||||||||||||| Sbjct 529129 TCCTTGACCTGAATAATCTGAGTCCTTATCTTTGTATTCTGCACCAAAATGCCTCCACTG 529070 Query 30259 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30318 ||| || || || || |||||||| || |||| ||| ||| ||| ||||||| Sbjct 529069 GAAGCCATAAACTGGACCCAGGTCCCCTTCTTGTCTGGTGGAGAATCCCAGTCTGTCCAA 529010 Query 30319 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGA 30378 |||||||| ||| | ||||| |||||||| || || ||||| ||| || ||||| | Sbjct 529009 AAAGTCTCGGGATGCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTAGC 528950 Query 30379 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30438 |||||||| || ||| |||||||||| |||||||| ||| ||||||| || || | Sbjct 528949 ATTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAGACACCCTTCCAGAATACACG 528890 Query 30439 CTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACAC 30498 ||||| || || || ||||| | | | |||| ||| | |||| || ||||| Sbjct 528889 TTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCACACCTGCATGCCGAACAC 528830 Query 30499 GGACAAGACTCCCGTGCCCGTCCTGTC 30525 |||| | || |||||||| | ||| Sbjct 528829 CGACAGGGTGCCGGTGCCCGTGCGGTC 528803 >seq9 Length=116251907 Score = 147 bits (162), Expect = 2e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || ||||||||||| || |||||||| ||||| || | |||||||||||||| ||||| Sbjct 61685973 AGGCCGGTGACGTGCGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 61686032 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| |||||||||||||| ||||| || || ||||| || | | Sbjct 61686033 ACGCCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 61686092 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | ||| |||||||| || || ||||| || Sbjct 61686093 ACGTAGAACTGGCAGAGGGCATGGCACGGGGGCAGCGCCATCAG 61686136 Score = 113 bits (124), Expect = 4e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 30231 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30290 |||| ||||| || ||||||||||||||||| || || || || |||||||| || |||| Sbjct 61690123 TGTATTCTGCACCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTCCCCTTCTT 61690182 Query 30291 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30350 ||| ||| ||| ||||||||||||||| ||| | ||||| |||||||| | Sbjct 61690183 GTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGGGATGCATTGGCATCCCAGATTT 61690242 Query 30351 TTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 | || ||||| ||| || ||||| | |||||||| || Sbjct 61690243 TCACTCCCTTGGAAGACAGTTCTTTAGCATTTGTGGATCC 61690282 >seq13 Length=143360832 Score = 116 bits (128), Expect = 3e-21 Identities = 187/267 (70%), Gaps = 9/267 (3%) Strand=Plus/Plus Query 110371 GCCAGGTGATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATC 110430 || ||| ||| ||||| || || || || || || || ||||| |||||||| || Sbjct 59651781 GCAAGGAAATGTGCTCCTTGTGGCGGTTCCTTGAGTTCTCTACTGAGAACTACGTTGATT 59651840 Query 110431 CTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATC 110490 ||||| | | ||| | |||||| || || ||||||||||| ||||| || ||||| ||| Sbjct 59651841 CTGTCCTTTAAAGGCCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTCCCCATAATC 59651900 Query 110491 ACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAA 110549 |||| |||||| || ||| ||||| ||||| | |||| | ||| | || | | || Sbjct 59651901 ACCAGGTTCTGTTTACCTTCCACTGATGACGTTGGGGTC-ATTCTCTGGAAATACCTGAA 59651959 Query 110550 ATCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTC 110609 || | || || |||||||||| || ||||| || ||||||||||||| Sbjct 59651960 TTCGT-------CCTGAGCGGGGGCCACGGCAGGTCCCCGTTCTTGCCGATGCCCATGTT 59652012 Query 110610 TGGACACGCGGCCACGATACCGTTCAG 110636 | | || | || ||||| | ||| || Sbjct 59652013 TTGTGACACAGCGACGATGCAGTTGAG 59652039 >seq11 Length=87554214 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| ||| || ||||| | | ||| | |||||| || || Sbjct 1185577 TTGAGTTCTCTACTGAGAACTATGTTGATTCTGTCCTTTAAAGGCCGATTCTTCTCTGGA 1185636 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| || ||||| ||||||| |||||| || ||| Sbjct 1185637 ATGGAGAACCAGGTCTTCCTCCCCATAATCACCAGGTTCTGTTTACCT 1185684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406294350866172