Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq107 466 2e-126 seq9 181 9e-41 >seq107 Length=1146635 Score = 466 bits (516), Expect = 2e-126 Identities = 531/713 (74%), Gaps = 0/713 (0%) Strand=Plus/Plus Query 34139 GGCTACCGGAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCC 34198 |||| | |||||| |||||| || || || || ||||| || |||||||||| |||| Sbjct 528788 GGCTTCAGGAAGGAGGACCGCACGGGCACCGGCACCCTGTCGGTGTTCGGCATGCAGGTG 528847 Query 34199 CGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGC 34258 | |||| ||| | | |||||||| |||||||| || |||||||| | ||||||||| Sbjct 528848 TGCTACAGCCTGAGAGATGAATTTCCTCTGCTGACAACCAAACGTGTATTCTGGAAGGGT 528907 Query 34259 GTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCC 34318 || | |||||| |||||||||| | | ||| |||| || | || || || || ||| Sbjct 528908 GTCTTGGAGGAGTTGCTGTGGTTTATCAAGGGATCCACAAATGCTAAAGAACTGTCTTCC 528967 Query 34319 CGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC 34378 ||| ||||| |||||||| || | | || ||||||||| |||||| | ||| ||| Sbjct 528968 AAGGGAGTGAAAATCTGGGATGCCAATGCATCCCGAGACTTTTTGGACAGACTGGGATTC 529027 Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438 | | | | || || ||| |||| || || || || ||||||||||| || ||||| Sbjct 529028 TCCACCAGACAAGAAGGGGACCTGGGTCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGT 529087 Query 34439 GCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTAC 34498 || || || | | || | || ||||| || || |||| ||||| |||||| | Sbjct 529088 GCAGAATACAAAGATAAGGACTCAGATTATTCAGGTCAAGGAGTAGACCAACTGCAGAAA 529147 Query 34499 GTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAAC 34558 |||||||| ||| | || ||||||||||||||||| ||| | ||||| || || || Sbjct 529148 GTGATCGATACCATCAAAACCAACCCTGATGACAGAAGAATCATCATGTGTGCCTGAAAT 529207 Query 34559 CCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC 34618 || || || || |||||||||||||| ||||| ||||| |||||||||| |||||||| Sbjct 529208 CCCAAAGACCTTCCTCTGATGGCGCTGCCCCCATGCCATGCCCTCTGCCAGTTCTACGTG 529267 Query 34619 GCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTG 34678 | |||||||||||||||||||||||| || ||| | |||||||||||| | | || ||| Sbjct 529268 GTGAATGGGGAGCTGTCCTGCCAGCTGTACCAAAGGTCGGGAGACATGAGCCTGGGCGTG 529327 Query 34679 CCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTG 34738 || |||||||| || || || || ||||||| |||||||||| |||||| || || Sbjct 529328 CCCTTCAACATCGCCAGCTATGCCTTGCTCACCTACATGATCGTGCATGTCACCGGCCTG 529387 Query 34739 GTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAG 34798 || || || | || ||||| ||||| ||||| ||||| |||||||||||||| ||| Sbjct 529388 AAGCCAGGTGATTTTGTACATACTTTGGGAGATGCCCATATTTACCTGAACCACATTGAG 529447 Query 34799 CGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851 | || | ||||| || ||||| || |||| ||||| |||||||||| Sbjct 529448 CCTCTGAAAACTCAGCTTCAGCGAGAACCAAGACCTTTCCCGAAGCTCAAAAT 529500 Score = 466 bits (516), Expect = 2e-126 Identities = 531/713 (74%), Gaps = 0/713 (0%) Strand=Plus/Minus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 |||||||||| ||||| |||| || ||||| || ||||| | || |||| ||| Sbjct 529500 ATTTTGAGCTTCGGGAAAGGTCTTGGTTCTCGCTGAAGCTGAGTTTTCAGAGGCTCAATG 529441 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 ||||||||||| ||||| ||||| ||||| ||||| || | || || || || || Sbjct 529440 TGGTTCAGGTAAATATGGGCATCTCCCAAAGTATGTACAAAATCACCTGGCTTCAGGCCG 529381 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 |||||| |||||||||| ||||||| || || || || |||||||| ||||| || Sbjct 529380 GTGACATGCACGATCATGTAGGTGAGCAAGGCATAGCTGGCGATGTTGAAGGGCACGCCC 529321 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAG 6733 | | |||||||||||| | ||| || |||||||||||||||||||||||| | |||||| Sbjct 529320 AGGCTCATGTCTCCCGACCTTTGGTACAGCTGGCAGGACAGCTCCCCATTCACCACGTAG 529261 Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793 || |||||||||| ||||| ||||| |||||||||||||| || || || || || || Sbjct 529260 AACTGGCAGAGGGCATGGCATGGGGGCAGCGCCATCAGAGGAAGGTCTTTGGGATTTCAG 529201 Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC 6853 || ||||| | ||| ||||||||||||||||| || | ||| |||||||| | |||| Sbjct 529200 GCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTATCGATCACTTTCTGC 529141 Query 6854 AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAG 6913 || ||||| |||| || || ||||| || | || | | || || || ||||| Sbjct 529140 AGTTGGTCTACTCCTTGACCTGAATAATCTGAGTCCTTATCTTTGTATTCTGCACCAAAA 529081 Query 6914 TGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCC 6973 || ||||||||||| || || || || |||| ||| || || | | | | ||| ||| Sbjct 529080 TGCCTCCACTGGAAGCCATAAACTGGACCCAGGTCCCCTTCTTGTCTGGTGGAGAATCCC 529021 Query 6974 CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAG 7033 | |||||| ||||||||| || | | || |||||||| ||||| ||| ||| || Sbjct 529020 AGTCTGTCCAAAAAGTCTCGGGATGCATTGGCATCCCAGATTTTCACTCCCTTGGAAGAC 528961 Query 7034 AGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTC 7093 || || || | || |||| ||| | | |||||||||| |||||| | || |||||| Sbjct 528960 AGTTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAGACACCCTTC 528901 Query 7094 CAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGT 7153 ||| | |||||||| || |||||||| |||||||| | | ||| |||| | |||| Sbjct 528900 CAGAATACACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCACACCTGC 528841 Query 7154 GTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGGTAGCC 7206 |||||||||| || ||||| || || || || |||||| |||||| | |||| Sbjct 528840 ATGCCGAACACCGACAGGGTGCCGGTGCCCGTGCGGTCCTCCTTCCTGAAGCC 528788 >seq9 Length=116251907 Score = 181 bits (200), Expect = 9e-41 Identities = 139/165 (84%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| || ||||||||||| |||||||| || || || || |||||||| ||||| || | Sbjct 61685981 GACGTGCGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACGCCCAG 61686040 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 |||||||||||||| | || || |||||||||||||||||||||||| | |||||||| Sbjct 61686041 GCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACCACGTAGAA 61686100 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||||||| ||||||||||| |||||||||||||| || || Sbjct 61686101 CTGGCAGAGGGCATGGCACGGGGGCAGCGCCATCAGAGGAAGGTC 61686145 Score = 181 bits (200), Expect = 9e-41 Identities = 139/165 (84%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || || |||||||||||||| ||||||||||| |||||||||| |||||||| | |||| Sbjct 61686145 GACCTTCCTCTGATGGCGCTGCCCCCGTGCCATGCCCTCTGCCAGTTCTACGTGGTGAAT 61686086 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||||| || || | |||||||||||||| | || ||||| ||| Sbjct 61686085 GGGGAGCTGTCCTGCCAGCTGTACCAGAGGTCGGGAGACATGGGCCTGGGCGTGCCCTTC 61686026 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 ||||| || || || || |||||||| ||||||||||| || ||| Sbjct 61686025 AACATCGCCAGCTATGCCCTGCTCACCTACATGATCGCGCACGTC 61685981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448244239769520