Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq14 161 8e-35 seq13 158 1e-33 seq7 127 2e-24 seq9 122 7e-23 seq107 120 3e-22 seq22 87.8 1e-12 >seq14 Length=163896628 Score = 161 bits (178), Expect = 8e-35 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 1278 CAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCC 1337 || ||||| | |||| |||||||| ||| || || ||||||||||| |||| | Sbjct 106903931 CAGGAAGTCTTAGTTGTGACATGGCAGAAAAAGAAGGCTGTGAGCCCAGAAAATATGGTC 106903872 Query 1338 ACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATA 1397 || || || || |||| ||||| || || ||||| || ||||| || || | ||||| Sbjct 106903871 ACCTTCAGCAAGAACCATGGGGTGGTGGTGCAGCCTGCCTACAAGGACAAGTTAAACATC 106903812 Query 1398 ACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAA 1457 || |||| ||||| || ||| | || || ||||||||||| || || |||| ||||| Sbjct 106903811 ACCCAGCTGGGACTCCAGAACTCCACCATCACCTTCTGGAATACGACCCTGGAGGATGAG 106903752 Query 1458 GGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509 ||||| || | |||| | |||||||| ||||| ||||||||||| ||||||| Sbjct 106903751 GGGTGTTATATGTGTCTCTTTAACACCTTTGGGTCTGGGAAGATCTCAGGAA 106903700 >seq13 Length=143360832 Score = 158 bits (174), Expect = 1e-33 Identities = 365/545 (67%), Gaps = 5/545 (1%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 || ||||| || | ||||| || |||| |||||||| || || || || | ||||| Sbjct 59652039 CTCAACTGCATCGTCGCTGTGTCACAAAACATGGGCATCGGCAAGAACGGGGACCTGCCG 59651980 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTC--CACTG 2257 ||||| || || | | ||||| | |||| || | |||||| | | || || || Sbjct 59651979 TGGCCCCCGCTCAGGAC-GAATTCAGGTATTTCCAGAGAATGACCCCAACGTCATCAGTG 59651921 Query 2258 -ACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 | |||||||| | || |||||||| || ||||| ||||| || |||| || Sbjct 59651920 GAAGGTAAACAGAACCTGGTGATTATGGGGAGGAAGACCTGGTTCTCCATTCCAGAGAAG 59651861 Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCA 2376 | ||||||| || ||||||| || | |||||||||||| | || || || || ||| Sbjct 59651860 AATCGGCCTTTAAAGGACAGAATCAACGTAGTTCTCAGTAGAGAACTCAAGGAACCGCCA 59651801 Query 2377 CGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCA 2436 | || || || || |||| || ||| | | | | || | || |||| | |||| Sbjct 59651800 CAAGGAGCACATTTCCTTGCTAAGAGTCTGGCTGATGCCTTAAAACTTATTGAGGAACCA 59651741 Query 2437 GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAG 2496 ||||| ||| | ||||| | | |||||||| | || || || ||||| ||| |||| Sbjct 59651740 GAATTGGCAGATAAAGTGGACATGGTTTGGATAGTGGGAGGCAGCTCTGTGTATAAGGAA 59651681 Query 2497 AGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAA 2556 ||| | | || | | | |||||| | |||| ||| |||| |||||||| Sbjct 59651680 GCCATGAATCAGCCAGGCCATCTCAGACTGTTTGTGACAA-GATCATGCAGGAATTTGAA 59651622 Query 2557 TGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCA 2616 |||| || | || |||||||| || | |||||||||| || | || | ||| Sbjct 59651621 AGTGACACGTTTTTTCCAGAAATCGATTTGGAGAAATACAAACTGCTCCCAGAGTACCCA 59651562 Query 2617 GGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaa 2676 || || | |||| || || || || || || || | ||||||||||| | |||||| Sbjct 59651561 GGCGTCCTTTCTGGTGTCCAGGAGGAGAAAGGCATCAAGTACAAATTTGAAGTTTATGAA 59651502 Query 2677 aaaaa 2681 || || Sbjct 59651501 AAGAA 59651497 >seq7 Length=173684459 Score = 127 bits (140), Expect = 2e-24 Identities = 365/550 (66%), Gaps = 26/550 (5%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 || ||||| || | ||||| || | || ||||||||||| || || | | ||||| Sbjct 22061621 CTCAACTGCATCGTTGCTGTGTCCCAGAACATGGGCATTGGCAAGAACAGGGACCTGCCG 22061562 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTC--CACTG 2257 ||||| || || | |||||||| | | |||| || | |||||| | || || || Sbjct 22061561 TGGCCCCCGCTCAGGAATGAATTCAGATATTTCCAGAGAATGACCACAATGTCGTCAGTG 22061502 Query 2258 -ACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 | |||||||| | || |||||||| ||| ||| |||| || Sbjct 22061501 GAAGGTAAACAGAACCTGGTGATTATGGGGAGA-----------TTC--TTCCAGAGAAG 22061455 Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCA 2376 | ||||||| || ||||||| || | |||||||||||| | | | || || ||| Sbjct 22061454 AATCGGCCTTTAAAGGACAGAATCAACATAGTTCTCAGTAGAGAATTCATGGACCCGCCA 22061395 Query 2377 CGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAAT-AGGA-C 2434 | || || || || |||| || ||| | | | | || || ||| | || | |||| | Sbjct 22061394 CAAGGAGCGCATTTCCTTGCTAAGAGTCTGGCTGATGC-CTTAAAACT-TACTGAGGAAC 22061337 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 ||||||| ||| | ||||| | | |||||||| | || || || ||||| ||| ||| Sbjct 22061336 CAGAATTGGCAGATAAAGTGGACATGGTTTGGATAGTGGGAGGCAGCTCTGTGTATAAGG 22061277 Query 2495 AGAGCATTACAAGATCTTG--CAAA-CAGATGCTGTTTTTAACAAGGATTCTGCAAAAAT 2551 | ||| | | | | | || | |||| |||||| | |||||||| ||||| ||| Sbjct 22061276 AAGCCATCA-ATCAGCCAGGCCATATCAGA--CTGTTTGTGACAAGGATCATGCAAGAAT 22061220 Query 2552 TTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAAT 2611 ||||| |||| || | || |||||||| || | |||||||||| || | || | Sbjct 22061219 TTGAAAGTGACACGTTTTTTCCAGAAATCGATTTGGAGAAATACAAACTGCTCCCAGAGT 22061160 Query 2612 TTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATAT 2671 | || || | |||| || || || || || || || | ||||||||||| | | Sbjct 22061159 ACCTGGGCGTCCTTTCTGATGTCCAGGAGGAGAAAGGCATCAAGTACAAATTTGAAGTTT 22061100 Query 2672 ATGaaaaaaa 2681 ||||||| || Sbjct 22061099 ATGAAAAGAA 22061090 >seq9 Length=116251907 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 103570996 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 103570937 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 103570936 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 103570877 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 103570876 ATCGCCCTGTGGATGACTGA 103570857 >seq107 Length=1146635 Score = 120 bits (132), Expect = 3e-22 Identities = 398/612 (65%), Gaps = 24/612 (4%) Strand=Plus/Minus Query 118464 TTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTC 118523 |||||| ||||||||||| |||| || | ||| ||||| || | ||||||| || || Sbjct 529456 TTTCAGAGGCTCAATGTGGTTCAGGTAAATATGGGCATCTCCCAAAGTATGTACAAAATC 529397 Query 118524 ACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTAC 118583 ||| || | || || || | || | |||||||| || | ||| |||||||| | Sbjct 529396 ACCTGGCTTCAGGCCGGTGACATGCACGATCATGTAGGTGAGCAAGGCATAGCTGGCGAT 529337 Query 118584 ATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTC 118643 || || || || ||||| | ||||||| | || || ||||||| ||||| || ||||| Sbjct 529336 GTTGAAGGGCACGCCCAGGCTCATGTCTCCCGACCTTTGGTACAGCTGGCAGGACAGCTC 529277 Query 118644 CCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT----GGAAC 118699 ||| || | || || ||||| | | | || ||||| ||||| |||| |||| Sbjct 529276 CCCATTCACCACGTAGAACTGGCAGAGGGCATGGCATGGGGGCAGCGCCATCAGAGGAAG 529217 Query 118700 TCAGTTGGGCAGGATTCCAGGCTGTTAAAACATG-----CCTTCTGCTAT-ATGGTTCTA 118753 ||| ||||| ||||| | ||||| |||||| || | |||| Sbjct 529216 GTCTTTG----GGATTTCAGGC-----ACACATGATGATTCTTCTGTCATCAGGGTTGGT 529166 Query 118754 CCTGTATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATA--CTGAGA 118811 || || || || | ||||| | || || || || | || | ||| ||||| Sbjct 529165 TTTG-ATGGTATCGATCACTTTCTGCAGTTGGTCTACTCCTTGACCTGAATAATCTGAGT 529107 Query 118812 CTCGCATCCTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAG 118871 | | || |||| |||||||| |||||| ||||| || || |||||||| || ||||| Sbjct 529106 C-CTTAT-CTTTGTATTCTGCACCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAG 529049 Query 118872 ATCTCCCTGGGACCTAAAATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCATTAGC 118931 || || | || || || | | | | ||| ||| || |||| || Sbjct 529048 GTCCCCTTCTTGTCTGGTGGAGAATCCCAGTCTGTCCAAAAAGTCTCGGGATGCATTGGC 528989 Query 118932 ATTCCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAAAAA 118991 || ||| || ||||| || | ||| || |||| ||||| || || | | ||| Sbjct 528988 ATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTAGCATTTGTGGATCCCTTGATAAA 528929 Query 118992 CCAAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAA 119051 ||| || | |||||| | || || |||| || || ||| ||||| | ||| ||||| Sbjct 528928 CCACAGCAACTCCTCCAAGACACCCTTCCAGAATACACGTTTGGTTGTCAGCAGAGGAAA 528869 Query 119052 CTGACCTCTAAG 119063 | | |||| || Sbjct 528868 TTCATCTCTCAG 528857 >seq22 Length=111700775 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 2524 CTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAAT 2583 |||||| | |||||||| |||| |||||||| |||| |||| || ||||||||| || Sbjct 37501731 CTGTTTGTGACAAGGATCATGCAGGAATTTGAAAGTGACACATTTTTTCCAGAAATTGAT 37501672 Query 2584 CTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAA 2643 | |||||||||| || | || | ||||| || | |||| || || || || Sbjct 37501671 TTGGAGAAATACAAACTGCTCCCAGAGTACCCAGGCGTCCTTTCTGGTGTCCAGGAGGAG 37501612 Query 2644 AATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 || || || | ||||||||||| | |||||||| || Sbjct 37501611 AAAGGCATCAAGTACAAATTTGAAGTTTATGAAAAGAA 37501574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414460428295924