Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq7 118 7e-22 seq13 113 3e-20 seq188 100 2e-16 seq19 89.7 3e-13 >seq7 Length=173684459 Score = 118 bits (130), Expect = 7e-22 Identities = 145/197 (74%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||||| | | ||||| ||||| ||||| || || Sbjct 2561318 ATGCAGATCTTCGTGAAAACCCTTACGGGAAGACC-ATCACGCTCGAGGTTGAACCCTCG 2561260 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| ||||| ||||| || || ||||| | || || ||||| Sbjct 2561259 GATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 2561200 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| ||||| ||||||||||| | | | |||||| || |||||| Sbjct 2561199 CAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGATGGACTTTATCTGACTACAAC 2561140 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 2561139 ATTCAAAAGGAGTCTAC 2561123 >seq13 Length=143360832 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||| | |||||||| | ||| || || |||| ||| | ||||| || || Sbjct 88038878 ATGCAGATCTTCATGAAAACCCTTATGGGGAAGACCATCATGCTCAAGGTTGAACCCTCG 88038937 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| ||||| |||||| || || ||||| | || || ||||| Sbjct 88038938 GATACAATAGAAAATGTAAAAGCAAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 88038997 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| ||||| ||||||||||| | ||| |||||| || |||||| Sbjct 88038998 CAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGGACTTTATCTGACTACAAC 88039057 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 88039058 ATTCAAAAGGAGTCTAC 88039074 >seq188 Length=611413 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| |||||| | || || || || ||||| ||||| || || ||| Sbjct 74340 AATGCAGATCTTCGTGAAAACCTTAACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 74281 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || |||| | | ||||| || || | || || || | Sbjct 74280 TGACACCATCGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAGGGCATCCCCCCCGACC 74222 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||||||||| || |||||||||| ||||| | ||| |||| Sbjct 74221 AGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACA 74162 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || |||||||| Sbjct 74161 ACATCCAGAAGGAGTCCAC 74143 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| || || ||| Sbjct 73883 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 73824 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 73823 GACACCATCGAGAATGTCAAGGCGAAGA-TCCAGGACAAGGAGGGCATCCCCCCCGACCA 73765 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | |||||||||||||| || |||||||| | ||||| | ||| ||||| Sbjct 73764 GCAGAGGCTGATATTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 73705 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 73704 CATCCAGAAGGAGTCCAC 73687 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| || || ||| Sbjct 74111 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 74052 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 74051 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 73992 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||||| ||||| | ||| |||||| Sbjct 73991 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAAC 73932 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 73931 ATCCAGAAGGAGTCCAC 73915 >seq19 Length=57279966 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || |||||||| || || || ||| Sbjct 4088028 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 4088087 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | || || || || Sbjct 4088088 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAG 4088147 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || |||||||| || |||||||| | |||||| | || |||||| Sbjct 4088148 CAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 4088207 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 4088208 ATCCAGAAAGAGTCCAC 4088224 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || || || ||| Sbjct 4088256 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 4088315 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | || || ||||| | || || || || Sbjct 4088316 GACACCATCGAGAATGTCAAGGCCAAGA-TCCAGGATAAGGAAGGCATTCCTCCTGACCA 4088374 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || |||||||| | |||||| | || ||||| Sbjct 4088375 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAA 4088434 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 4088435 CATCCAGAAAGAGTCCAC 4088452 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || || || ||| Sbjct 4088484 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4088543 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || ||||| | || || || || Sbjct 4088544 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 4088603 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || |||||||| || |||||||| | |||||| | || |||||| Sbjct 4088604 CAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 4088663 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 4088664 ATCCAGAAAGAGTCCAC 4088680 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||| || || || || ||||| | || || || ||| Sbjct 4087799 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAG 4087858 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || | || | | || || ||||| | || || || | Sbjct 4087859 CGACACCATCGAGAATGTCAAGGCCAAGA-TCCAGGATAAGGAAGGCATTCCTCCCGACC 4087917 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || || |||||||| || |||||||| | |||||| | || |||| Sbjct 4087918 AGCAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACA 4087977 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 4087978 ACATCCAGAAAGAGTCCAC 4087996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337996248726428