Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq107 324 1e-83 seq9 158 1e-33 seq13 116 3e-21 seq11 87.8 1e-12 >seq107 Length=1146635 Score = 324 bits (358), Expect = 1e-83 Identities = 480/687 (70%), Gaps = 1/687 (0%) Strand=Plus/Minus Query 29611 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTA 29670 |||||||| ||| || || | || |||||| | |||| || || | ||||| ||||| Sbjct 529488 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGAGTTTTCAGAGGCTCAATGTGGTTCAGGTA 529430 Query 29671 GACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29730 | || |||||||||| || || ||||| || || || | || |||||||| || | Sbjct 529429 AATATGGGCATCTCCCAAAGTATGTACAAAATCACCTGGCTTCAGGCCGGTGACATGCAC 529370 Query 29731 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTC 29790 |||||||| ||||| | | |||||||||||||| |||||||| || || | |||||| Sbjct 529369 GATCATGTAGGTGAGCAAGGCATAGCTGGCGATGTTGAAGGGCACGCCCAGGCTCATGTC 529310 Query 29791 CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 29850 || ||||| ||||| |||||||| || ||||| || | |||||| ||||| || | Sbjct 529309 TCCCGACCTTTGGTACAGCTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAG 529250 Query 29851 GGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGAT 29910 ||||||||| || || || ||||| ||| | ||||||||| || |||||||||| ||| Sbjct 529249 GGCATGGCATGGGGGCAGCGCCATCAGAGGAAGGTCTTTGGGATTTCAGGCACACATGAT 529190 Query 29911 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 29970 ||| | ||||| || |||||| | ||||| || | | || ||||| || || || Sbjct 529189 GATTCTTCTGTCATCAGGGTTGGTTTTGATGGTATCGATCACTTTCTGCAGTTGGTCTAC 529130 Query 29971 CCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTG 30030 || || || || |||| | |||||||||||||| Sbjct 529129 TCCTTGACCTGAATAATCTGAGTCCTTATCTTTGTATTCTGCACCAAAATGCCTCCACTG 529070 Query 30031 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30090 ||| || || || || |||||||| || |||| ||| ||| ||| ||||||| Sbjct 529069 GAAGCCATAAACTGGACCCAGGTCCCCTTCTTGTCTGGTGGAGAATCCCAGTCTGTCCAA 529010 Query 30091 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 30150 |||||||| ||| | ||||| |||||||| || || ||||| || || ||||| | Sbjct 529009 AAAGTCTCGGGATGCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTAGC 528950 Query 30151 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30210 |||||||| || ||| |||||||||| |||||||| ||| ||||||| || || | Sbjct 528949 ATTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAGACACCCTTCCAGAATACACG 528890 Query 30211 CTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAACAT 30270 ||||| || || || ||||| | | | |||| ||| | | |||| || |||| Sbjct 528889 TTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCACACCTGCATGCCGAACAC 528830 Query 30271 GGACAAGACTCCCGTGCCTGTCCTGTC 30297 |||| | || ||||| || | ||| Sbjct 528829 CGACAGGGTGCCGGTGCCCGTGCGGTC 528803 >seq9 Length=116251907 Score = 158 bits (174), Expect = 1e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || ||||||||||| || |||||||| ||||| || | |||||||||||||| |||||| Sbjct 61685973 AGGCCGGTGACGTGCGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 61686032 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || ||||||||||| |||||||| || ||||| || | | Sbjct 61686033 ACGCCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 61686092 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | |||||||||||| || || ||||| ||| Sbjct 61686093 ACGTAGAACTGGCAGAGGGCATGGCACGGGGGCAGCGCCATCAGA 61686137 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||||||| || |||| ||| ||| Sbjct 61690137 AAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTCCCCTTCTTGTCTGGTGGAGAAT 61690196 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||||||||||| ||| | ||||| |||||||| || || ||||| Sbjct 61690197 CCCAGGCTGTCCAAAAAGTCTCGGGATGCATTGGCATCCCAGATTTTCACTCCCTTGGAA 61690256 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || ||||| | |||||||| || Sbjct 61690257 GACAGTTCTTTAGCATTTGTGGATCC 61690282 >seq13 Length=143360832 Score = 116 bits (128), Expect = 3e-21 Identities = 187/267 (70%), Gaps = 9/267 (3%) Strand=Plus/Plus Query 114254 GCCAGGTGATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGC 114313 || ||| ||| ||||| || || || || || || || ||||| |||||||| | Sbjct 59651781 GCAAGGAAATGTGCTCCTTGTGGCGGTTCCTTGAGTTCTCTACTGAGAACTACGTTGATT 59651840 Query 114314 CTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATC 114373 ||||| | | ||| | |||||| || || ||||||||||| ||||| || ||||| ||| Sbjct 59651841 CTGTCCTTTAAAGGCCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTCCCCATAATC 59651900 Query 114374 ACCACGTTCTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAA 114432 |||| |||||| |||||| | || ||||| | |||| | ||| | || | | || Sbjct 59651901 ACCAGGTTCTGTTTACCTTCCACTGATGACGTTGGGGTC-ATTCTCTGGAAATACCTGAA 59651959 Query 114433 ATCTTTGCAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTC 114492 || | || | ||| |||||||||| || ||||| || ||||||||||||| Sbjct 59651960 TTCGT-------CCTGAGCGGGGGCCACGGCAGGTCCCCGTTCTTGCCGATGCCCATGTT 59652012 Query 114493 TGGACACGCTGCCACGATACCGTTCAG 114519 | | || | || ||||| | ||| || Sbjct 59652013 TTGTGACACAGCGACGATGCAGTTGAG 59652039 >seq11 Length=87554214 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| ||| | ||||| | | ||| | |||||| || || Sbjct 1185577 TTGAGTTCTCTACTGAGAACTATGTTGATTCTGTCCTTTAAAGGCCGATTCTTCTCTGGA 1185636 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| || ||||| ||||||| |||||| |||||| Sbjct 1185637 ATGGAGAACCAGGTCTTCCTCCCCATAATCACCAGGTTCTGTTTACCT 1185684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406147156680526