Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq15 147 2e-30 seq3 91.5 1e-13 >seq15 Length=109054052 Score = 147 bits (162), Expect = 2e-30 Identities = 212/296 (72%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || ||||| || ||||| || || | ||||| || ||||| ||| |||||||||| | Sbjct 46625409 GTGAAAACGGACATTCAGATAGCTCTTCCTTCTGGATGCTATGGAAGAATAGCTCCACGT 46625468 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||||| ||||| | ||| |||| || || ||||| || |||||||||||| ||| ||| Sbjct 46625469 TCTGGCTTGGCTGCAAAATACTTCATAGATGTGGGAGCTGGTGTTATAGATGAAGATTAT 46625528 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAA 31948 |||||||| ||||| |||| |||||||||||||| |||||| | | || | ||| Sbjct 46625529 AGAGGAAATGTTGGTGTTGTATTGTTTAATTTTGGCAAAGAAAAGT-TTGAAG--TCAAA 46625585 Query 31949 AAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAATAGAAGTA 32008 ||||| || || | || || || ||||| ||| || || ||||||||| | Sbjct 46625586 AAGGGTGACAGAATTGCACAGCTCATTTGTGAACGGATTTTTTATCCAGAAATAGAAGAA 46625645 Query 32009 GCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGGAAA 32064 | | | | | ||| ||| ||||||| || ||| ||||| ||||| || || Sbjct 46625646 GTTCAAGTTTTGGATGACACTGAAAGAGGTGCAGGAGGTTTTGGTTCTACTGGGAA 46625701 >seq3 Length=155691105 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| || ||||| ||||| || || ||||||||||||||||| || || |||||||| || Sbjct 117747330 TACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGAT 117747389 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||| || | || || | ||||| | |||||||| || | ||| || | ||| ||||| Sbjct 117747390 AAAATATTTCTCATCTGATGTAAGTCTGTTCCAGTGAGGGAGATCCTTTGATAAGTCAAC 117747449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427032731674253