Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq107 347 9e-91 seq9 147 2e-30 >seq107 Length=1146635 Score = 347 bits (384), Expect = 9e-91 Identities = 490/687 (71%), Gaps = 1/687 (0%) Strand=Plus/Minus Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164 |||||||| ||| || || | || |||||||| ||||| || || | ||| | |||||| Sbjct 529488 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGAGTTTTCAGAGGCTCAATGTGGTTCAGGTA 529430 Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224 | || || ||||||| || || ||||| || || || | || |||||||| || | Sbjct 529429 AATATGGGCATCTCCCAAAGTATGTACAAAATCACCTGGCTTCAGGCCGGTGACATGCAC 529370 Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 |||||||| ||||| | | |||||||||||||| ||||| || || || | |||||| Sbjct 529369 GATCATGTAGGTGAGCAAGGCATAGCTGGCGATGTTGAAGGGCACGCCCAGGCTCATGTC 529310 Query 27285 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATAT 27344 |||||||| ||||| ||||| || || ||||| |||| ||||| ||||| || | Sbjct 529309 TCCCGACCTTTGGTACAGCTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAG 529250 Query 27345 GGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGAT 27404 ||| ||||| || || || ||||| || | ||||||||| || ||||| |||| ||| Sbjct 529249 GGCATGGCATGGGGGCAGCGCCATCAGAGGAAGGTCTTTGGGATTTCAGGCACACATGAT 529190 Query 27405 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 27464 ||| | ||||| || |||||| | ||||| || | | || ||||| || || || Sbjct 529189 GATTCTTCTGTCATCAGGGTTGGTTTTGATGGTATCGATCACTTTCTGCAGTTGGTCTAC 529130 Query 27465 CCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTG 27524 || || || || ||| | | || |||| ||||| || ||||||||||| || Sbjct 529129 TCCTTGACCTGAATAATCTGAGTCCTTATCTTTGTATTCTGCACCAAAATGCCTCCACTG 529070 Query 27525 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 27584 ||| || || || || |||||||| || |||| ||| ||| ||| ||||||| Sbjct 529069 GAAGCCATAAACTGGACCCAGGTCCCCTTCTTGTCTGGTGGAGAATCCCAGTCTGTCCAA 529010 Query 27585 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 27644 |||||||| ||| | ||||| |||||||| || || ||||| || || ||||| | Sbjct 529009 AAAGTCTCGGGATGCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTAGC 528950 Query 27645 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 27704 |||||||| || ||| |||||||||| |||||||| ||| ||||||| || || | Sbjct 528949 ATTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAGACACCCTTCCAGAATACACG 528890 Query 27705 CTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACAC 27764 ||||| || || || ||||| | | | |||| ||| | |||| || ||||| Sbjct 528889 TTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCACACCTGCATGCCGAACAC 528830 Query 27765 GGACAAGACTCCCGTGCCCGTCCTGTC 27791 |||| | || |||||||| | ||| Sbjct 528829 CGACAGGGTGCCGGTGCCCGTGCGGTC 528803 >seq9 Length=116251907 Score = 147 bits (162), Expect = 2e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || ||||||||||| || |||||||| ||||| || | |||||||||||||| ||||| Sbjct 61685973 AGGCCGGTGACGTGCGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 61686032 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| |||||||||||||| ||||| || || ||||| |||| Sbjct 61686033 ACGCCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 61686092 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | ||| |||||||| || || ||||| || Sbjct 61686093 ACGTAGAACTGGCAGAGGGCATGGCACGGGGGCAGCGCCATCAG 61686136 Score = 104 bits (114), Expect = 2e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 27497 TGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 27556 |||| ||||| || ||||||||||| ||||| || || || || |||||||| || |||| Sbjct 61690123 TGTATTCTGCACCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTCCCCTTCTT 61690182 Query 27557 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 27616 ||| ||| ||| ||||||||||||||| ||| | ||||| |||||||| | Sbjct 61690183 GTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGGGATGCATTGGCATCCCAGATTT 61690242 Query 27617 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 | || ||||| || || ||||| | |||||||| || Sbjct 61690243 TCACTCCCTTGGAAGACAGTTCTTTAGCATTTGTGGATCC 61690282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369492604581071