Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq15 143 4e-29 seq1 109 8e-19 seq3 96.9 5e-15 >seq15 Length=109054052 Score = 143 bits (158), Expect = 4e-29 Identities = 250/359 (70%), Gaps = 15/359 (4%) Strand=Plus/Minus Query 45877 CCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTTC 45936 ||||| || ||||| ||| || |||||||||| |||| | | ||| ||||| | Sbjct 46625698 CCAGTAGAACCAAAACCTCCTGCACCTCTTTCAGTGTCATCCAAAACTTGAACTTCTTCT 46625639 Query 45937 AGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTATT 45996 | || |||||| | || |||| | | || || || || ||||| |||||| | || | | Sbjct 46625638 ATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCTGTCACCCTTTTTGACT 46625579 Query 45997 TCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTCA 46056 ||||| | ||||| ||| ||| | || | || |||| | ||||||||||||||| Sbjct 46625578 TCAAACTTTTCTTTGCCAAAATTAAACAATACAACACCAACATTTCCTCTATAATCTTCA 46625519 Query 46057 TCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGAGCT 46113 ||||| || || |||||||||| || |||| || || ||||| | |||||| Sbjct 46625518 TCTATAACACCAGCTCCCACATCTATGAAGTATTTTGCAGCCAAGCCAGAACGTGGAGCT 46625459 Query 46114 ATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATCT 46169 ||||||||||| ||||| || | || ||| |||| || ||||| | |||| Sbjct 46625458 ATTCTTCCATAGCATCCAGAA----GGAAGAGCTATCTGAATGTCCGTTTTCA-CAAT-G 46625405 Query 46170 CCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCTGC 46226 |||||||| ||| || | ||||| || || |||||||| | || || || || || Sbjct 46625404 GCTTTCTCCATAGGTGGTACGGTATAATCATAAGCACTGTACAGGTCGTAGCCCGCGGC 46625346 >seq1 Length=194850757 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| || || ||||| ||||| || || || || || || ||||| | ||| Sbjct 145049073 TGAAATTCTCCTGATAAGACTCTGCGAGTATAGATGTTGCTAGTGTACGGTTCAATGGAT 145049014 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| || |||||||| |||||||||||||| || || | | |||||| Sbjct 145049013 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTTGGCATCGGGGCAAGAAGTAAACTG 145048954 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 145048953 TTTCTTATACCAT 145048941 Score = 107 bits (118), Expect = 3e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| ||||||| || ||||| | || | ||| Sbjct 145038468 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACGCTGT 145038409 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| || ||||| | ||||| ||||||| || Sbjct 145038408 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATATCTAAATGCCAAGGC 145038349 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | ||||||| || Sbjct 145038348 TCCAGGTAAATAGCAAATGCTCCAGGACG 145038320 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| | |||||||| || || Sbjct 145032179 GTGCCGGCATTGAAGAGAGTGGGAGAGGCATGAGTAAACCACCTCTCAGAAAGCAGGTTA 145032120 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||||||| || | || ||||| || ||||| || || | ||| | ||||||| Sbjct 145032119 TAGGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATCCCCACAGATACTCTCATCAAC 145032060 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| || ||||| ||| || Sbjct 145032059 ATATGTTGTGGTCTCTCAGCC 145032039 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| ||||||||||| |||||||| ||||| || |||||||| |||||||| ||| Sbjct 145038908 TCAAATTCCTCTCCCCAAACTTCATCCAAACCAGGACACTCATTTGGACACATCAAGGAC 145038849 Query 77985 CAGTC 77989 ||||| Sbjct 145038848 CAGTC 145038844 >seq3 Length=155691105 Score = 96.9 bits (106), Expect = 5e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 ||||||| |||||||| ||||||||||| || |||||||| ||||| ||||| |||| Sbjct 117747332 CCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGATAA 117747391 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 48633 ||||||| || | || || ||| | ||||||| | || ||| ||||||| Sbjct 117747392 AATATTTCTCATCTGATGTAAGTCTGTTCCAGTGAGGGAGATCCTTTGATA 117747442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694640657230240