Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq15 122 1e-22 seq1 109 8e-19 seq3 107 3e-18 >seq15 Length=109054052 Score = 122 bits (134), Expect = 1e-22 Identities = 217/312 (70%), Gaps = 15/312 (5%) Strand=Plus/Minus Query 44411 TTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATC 44470 ||| ||||| |||| || |||||| | || |||| | | || || || || ||||| || Sbjct 46625651 TTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCTGTC 46625592 Query 44471 ACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCC 44530 ||| | || | || ||| | ||||| ||| ||| | ||| | || |||| || || Sbjct 46625591 ACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAATACAACACCAACATTTCC 46625532 Query 44531 CCTATAATCTTCATCTATTACTCCACCTCCCACATCAAT---ACCTTTTAGAGAAAGACC 44587 ||||||||||||||||| || ||| |||||||||| || |||| || | || Sbjct 46625531 TCTATAATCTTCATCTATAACACCAGCTCCCACATCTATGAAGTATTTTGCAGCCAAGCC 46625472 Query 44588 CGATCTAGGCGCTATTCTTCCATA----ACAGAATTTTGGCATAGACATACGAATATCTG 44643 || | || |||||||||||||| ||||| || | || || |||| || | Sbjct 46625471 AGAACGTGGAGCTATTCTTCCATAGCATCCAGAA----GGAAGAGCTATCTGAATGTCCG 46625416 Query 44644 TTTTAATCAACCGTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACTGTATAAATC 44701 |||| | ||| | |||||||| ||| || | |||||||| ||||||||||| | || Sbjct 46625415 TTTTCA-CAA-TGGCTTTCTCCATAGGTGGTACGGTATAATCATAAGCACTGTACAGGTC 46625358 Query 44702 ATATCCTGCCGC 44713 || || || || Sbjct 46625357 GTAGCCCGCGGC 46625346 >seq1 Length=194850757 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| || || ||||| ||||| || || || || || || ||||| | ||| Sbjct 145049073 TGAAATTCTCCTGATAAGACTCTGCGAGTATAGATGTTGCTAGTGTACGGTTCAATGGAT 145049014 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| || ||||||||||||||||| ||||| || || | | |||||| Sbjct 145049013 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTTGGCATCGGGGCAAGAAGTAAACTG 145048954 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 145048953 TTTCTTATACCAT 145048941 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 ||| ||||| || | || | || | ||||| || || || || || || || || || Sbjct 145043055 ATAGGTTTCATATGGGCCATGCTCCTTGGCTAGGTCACAGCTGGCTTCCAAGGCTCCATA 145042996 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 |||||| ||||| || || | |||||| | ||| || || |||| ||||||||||| Sbjct 145042995 ATAAATAGTTTCAAAGATTTGCTTATTCAACAATTGGGCCTCTGGACTCTCAAAAGGATA 145042936 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCT 76137 | |||||||| |||||||| || || || |||||||| ||||| || | ||| | Sbjct 145042935 TCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACTCCAATTCCAATGGGACGATGGCG 145042876 Query 76138 CTTATTGGA 76146 ||||| || Sbjct 145042875 TTTATTTGA 145042867 Score = 91.5 bits (100), Expect = 2e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||| Sbjct 145038908 TCAAATTCCTCTCCCCAAACTTCATCCAAACCAGGACACTCATTTGGACACATCAAGGAC 145038849 Query 76580 CACTC 76584 || || Sbjct 145038848 CAGTC 145038844 >seq3 Length=155691105 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | || || ||||| ||||| |||||||| || || | ||| | Sbjct 117739708 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATCAGACCTCTCTTCT 117739767 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 117739768 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAGG 117739827 Query 46772 CGAC 46775 | || Sbjct 117739828 CCAC 117739831 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 |||||| ||||| || ||||||||||| || |||||||| || || ||||| ||||| Sbjct 117747333 CAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGATAAA 117747392 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 47122 |||||| ||||| | || ||| | ||||||| | || ||| ||||||| Sbjct 117747393 ATATTTCTCATCTGATGTAAGTCTGTTCCAGTGAGGGAGATCCTTTGATA 117747442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712905517245120