Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq188 156 3e-33 seq19 147 2e-30 seq7 127 1e-24 seq14 111 1e-19 seq11 87.8 1e-12 >seq188 Length=611413 Score = 156 bits (172), Expect = 3e-33 Identities = 176/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | || ||||||||| || ||| |||||| ||||||||||| || Sbjct 73881 CATGCCACCTCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 73940 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| |||| ||||||||||| ||||||||||||| | |||||| || | Sbjct 73941 GGACAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGG 74000 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| |||||| || | | |||| | |||||||| || | Sbjct 74001 GGGGATGCCCTCCTTGTCCTGGATCTTC-GCCTTGACGTTCTCGATGGTGTCACTGGGCT 74059 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| | || || ||||| || || ||||||||||||||||| |||||| Sbjct 74060 CCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 74112 Score = 141 bits (156), Expect = 7e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | || ||||||||| || ||| |||||| ||||||||||| || Sbjct 74109 CATGCCACCTCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 74168 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| |||| ||||||||||| ||||||||||||| | |||||| || | Sbjct 74169 GGACAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGG 74228 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| ||| | | ||| | |||||||| || | Sbjct 74229 GGGGATGCCCTCCTTGTCCTGGATCTT-TGCCTTGACATTCTCGATGGTGTCACTGGGCT 74287 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| | || || ||||| || || | ||| ||||||||||| ||||| Sbjct 74288 CCACCTCGAGGGTGATGGTCTTGCCAGTTAAGGTTTTCACGAAGATCTGCAT 74339 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || |||| ||| || ||| |||||| ||||||||||| |||| Sbjct 73657 CCTCCCCTCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 73716 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| |||||||| |||| | |||||| || | || Sbjct 73717 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGCTGGTCGGGGGGG 73776 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| |||||| ||| | | | |||||||| || |||||| Sbjct 73777 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 73836 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | || || ||||| || || ||||||||||||||||| |||||| Sbjct 73837 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 73884 >seq19 Length=57279966 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||||||| | || |||||||| || ||| ||| || ||||||||||| || Sbjct 4088486 CATACCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 4088427 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || |||||||| | | |||||| || | Sbjct 4088426 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGG 4088367 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| ||||| ||| | | | ||||||||| || || Sbjct 4088366 AGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTC 4088307 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| || |||||||||||||||||||| ||||| Sbjct 4088306 CACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4088256 Score = 145 bits (160), Expect = 5e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||||||| | || |||||||| || ||| ||| || ||||||||||| || Sbjct 4088258 CATACCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 4088199 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| ||||| ||||| | | |||||| || | Sbjct 4088198 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGG 4088139 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| ||||| ||| | |||| | |||||||| || | Sbjct 4088138 AGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGAC-GTTCTCGATGGTGTCACTGGGCT 4088080 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| || |||||||||||||||||||| ||||| Sbjct 4088079 CCACCTCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4088028 Score = 143 bits (158), Expect = 2e-29 Identities = 175/238 (74%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||||||| | || |||||||| || ||| ||| || ||||||||||| || Sbjct 4088030 CATACCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 4087971 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| ||||| ||||| | | |||||| || | Sbjct 4087970 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGG 4087911 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| ||||| ||| | | | ||||||||| || || Sbjct 4087910 AGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTC 4087851 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGA 44344 |||||||| || || ||||| || || ||||||||||||||||| ||||| ||||| Sbjct 4087850 CACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT--TGTGA 4087795 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | ||||| || || ||| ||| || ||||||||||| || | Sbjct 4088710 CCACCCCTCAGACGGAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 4088651 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| ||||| ||||| | | |||||| || | ||| Sbjct 4088650 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCAGGAGGA 4088591 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||||| ||| ||||| ||| | |||| | |||||||| || ||||| Sbjct 4088590 ATGCCTTCCTTATCCTGGATCTTGGCCTTGAC-GTTCTCGATGGTGTCACTGGGCTCCAC 4088532 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || ||||| || |||||||||||||||||||| ||||| Sbjct 4088531 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4088484 >seq7 Length=173684459 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || |||| ||| || ||| |||||| ||||||||||| |||| Sbjct 24645099 CCTCCCCTCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 24645040 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || |||||||| || | ||||||||||| | |||||| || | || Sbjct 24645039 AGGGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 24644980 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| |||||| ||| | | | |||||||| || |||||| Sbjct 24644979 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 24644920 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | || || ||||| || || ||||||||||||||||| |||||| Sbjct 24644919 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 24644872 Score = 114 bits (126), Expect = 9e-21 Identities = 157/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| |||||||| || ||||||||| |||||||| || | | | Sbjct 2561102 AGTCTCAACACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCAT 2561161 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||| ||||| || ||||| |||| | |||||||| | ||| | |||||| Sbjct 2561162 CCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 2561221 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| || || || | || |||| || || | || ||| ||||| | ||| Sbjct 2561222 TTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGCGTG 2561281 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||| ||||||| ||||| ||||||||||| ||||| Sbjct 2561282 ATGGTC-TTCCCGTAAGGGTTTTCACGAAGATCTGCAT 2561318 >seq14 Length=163896628 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || |||| ||| || ||| ||| || |||||||||| |||| Sbjct 150521852 CCTCCCCTCAGACGCAGGACCAAGTGCAGAGTGGACTCTTTCGGGATGTTGTAGTCGGAC 150521911 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||| ||||| || |||||||||| | |||||| | | ||| Sbjct 150521912 AGGGTGCGTCCATCTTCCAGGTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTAAGGGGGC 150521971 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCT-ATGGTGTCGGCGGATTCCAC 44289 || ||||| ||| |||||| ||| | |||| |||||||| || ||||| Sbjct 150521972 GTGCCCTCCTTGTCCTGGATCTTCGCCTTGAC-GTTCTAGATGGTGTCACTGGGCTCCAC 150522030 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| | || || ||||| || || ||||||||||||||||| ||||| Sbjct 150522031 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 150522078 >seq11 Length=87554214 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/231 (70%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAAT-C 44166 || || || | ||| | || ||||||||| || ||| ||| || ||||||||||| | | Sbjct 46295934 ATGCCGCCACGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCC 46295875 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | | || ||| ||| |||||||| || || | || |||| || |||||| || | Sbjct 46295874 GACAGGGTGCTGCT-GTCCTCCAGCTGTTTGCCCACGAAAATCAGACACTGCTGGTCAGG 46295816 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| |||| | ||| | ||| |||| || | Sbjct 46295815 CGGGATGCCCTCCTTGTCTTGGATCTT-GGCTTTGACATTCTCGATGATGTC-CTGGGCT 46295758 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCA 44336 | ||||| | | || ||||| ||||| ||||||||||| ||||| |||| Sbjct 46295757 CGACCTCGAGGGCGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCA 46295707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359976180491697