Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq16 152 7e-32 seq23 122 1e-22 >seq16 Length=84478945 Score = 152 bits (168), Expect = 7e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||| || ||||| ||| |||||||||||| || ||||| || ||||||||||| Sbjct 83710140 GTCTGGAATAGCTGCTCATCATCCCATTCTGGATGCTCCTGTTTGAGCACATCGCACACT 83710081 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| ||||||| ||||||||| ||||| |||||||| | ||||| ||||| ||||| Sbjct 83710080 CTGTTATGTTCCCGGAGCCAGATTGTGGCATACATCATCAAACCAGGCACCAGACCAAAC 83710021 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | || || || ||||| | ||| || | || | | || || |||||||| | | Sbjct 83710020 ACTTCCTGGCCCACAGCAAACTGCAGGTGCGCAGGGATGTGAGGCGGGTAGATCATCTCC 83709961 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479 ||||| ||| ||||| | || ||||| | || || ||||| Sbjct 83709960 ACCTGCGTGTCCTTGACTGTTGGAGGATATACCTCTCCATCAAT 83709917 Score = 132 bits (146), Expect = 7e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 ||| |||||||||||||||||||| |||||||| || || ||| | ||| ||| | || Sbjct 83708960 TCTCACCCCATGTCCCAGTCCTTTGGTGAAGGCTGGTCCCCGCTTAAGATCTGTCTTGAA 83708901 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||||| ||||| || ||| |||| || |||||||| | ||||||||||||||| || Sbjct 83708900 GAACTGGTGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTGGTGCCCTGGGGGTC 83708841 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGT 9809 ||| |||| | || | || ||| ||| ||||| |||| Sbjct 83708840 GGGGATGAACTTTCTTCTGAGGAGAAGTTTCTCCACCACGT 83708800 Score = 129 bits (142), Expect = 8e-25 Identities = 200/286 (70%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| || ||| | |||| || |||||||| | || | || ||||| Sbjct 83711798 AAGGGACAGCCCTTCACATTGTTGCAGATGAGGGACTGAATCGAGGCAGTGTTAACGATT 83711739 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 ||| || || ||||| || || ||||| ||||||||||| || || || || Sbjct 83711738 TTGAAACCGACTTCTCCACCAAACGTGCTTGGCTTCCAGTAGTTAGGAGAACATATAGGA 83711679 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | ||||||||| || |||| || | ||| ||| || ||| Sbjct 83711678 TTACCCATCAGTCCTTTTAAGGAGAACGGTGCTCCCATTTCTACCATGGACTCCCCAAAG 83711619 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 ||||| | || || || | ||||||| | | | ||||| ||||| || || | | Sbjct 83711618 ATGGCATCCGGGCGCGGTCTCTCCACCAGCAGGGCAGGATACAGTTCCACGGCATCAATG 83711559 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || ||||| || || || |||||||| |||||||| || |||| Sbjct 83711558 TCGCCGTAGAGCGCTTCCAGCTCGGCAGCCATCTCCTTCTCCCCTG 83711513 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 8941 ACACTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGA 9000 || ||||| | ||| || ||||| | ||||| ||||| || | |||||||| || || Sbjct 83710740 ACGCTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAAGTCCATGT 83710681 Query 9001 GTCATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAA 9058 || ||||| || |||||||||| || ||| | |||| |||| | ||||| Sbjct 83710680 TCCAGTAGTATAGAGTTGTTGTAGAGAAACTGTTGA--TAGTTGTACTGCTGGTCATCAA 83710623 Query 9059 TCTCAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATA 9118 | | ||| | || |||| || | |||||||||||| | |||||||||| | | | Sbjct 83710622 TTTGAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGTGTGTTAAACTCAGCAGCAA 83710563 Query 9119 TACGATTTTGGTACTGGAA 9137 | || |||||||||||||| Sbjct 83710562 TCCGGTTTTGGTACTGGAA 83710544 >seq23 Length=14171072 Score = 122 bits (134), Expect = 1e-22 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||||| || ||| ||||| || || || || ||||| |||||||||||| | |||| Sbjct 4845154 TCTTGATGAGATTGAAGCCCACCTCGCCACCAAATGTGCTTGGCTTCCAGTACTCTGGGG 4845213 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| |||| | | || || ||||||||||| |||||||| | ||||| |||| Sbjct 4845214 AACAGATGGGGTTCCCTAAAAGACCCTTGAGGGAGAAGGGAGCCCCAATCTCGATCATGC 4845273 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||||| ||| || || |||||||| | | || | ||| | |||| Sbjct 4845274 TCTCCCCAAAGATGGAGTTTGGCTGGCACTTTTCCAGAAGCAGCCCCGGGTAGAATTCCA 4845333 Query 8529 CAGCCTCGACGTCTCCGTAAAG 8550 || || | |||||| || || Sbjct 4845334 AGGCGTCAATGTCTCCATAGAG 4845355 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 || |||||||| |||| |||| |||||| | || || || |||| | || | | Sbjct 4856735 CTCACCCCATGGCCCAAGGCTTTGGTGAAGCCAGGACCCATCTTGCCAGAG--GTTTTGA 4856792 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | ||||| || ||||| ||||| |||||||||||||||| | ||||||||| ||||| | Sbjct 4856793 AGAACTGATGGGTGAAGTGTTGTGCAAAAAAGGCAAACATGAGGTTGGTGCCTTGGGGGT 4856852 Query 9768 CGGGAGTGAAGGTCCTCC 9785 | || |||| ||||||| Sbjct 4856853 CTGGGATGAACGTCCTCC 4856870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716847757528640