Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq19 172 1e-37 seq188 154 4e-32 seq7 149 2e-30 seq2 134 3e-26 seq14 131 4e-25 seq15 102 2e-16 seq121 98.7 2e-15 seq17 84.2 5e-11 >seq19 Length=57279966 Score = 172 bits (190), Expect = 1e-37 Identities = 164/208 (79%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| || || || |||||||| |||||||| || ||| Sbjct 4088487 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 4088544 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| ||||| || ||||| || ||||| ||||||| Sbjct 4088545 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAGC 4088604 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| |||||||| | |||||| | || || ||| Sbjct 4088605 AGAGGCTCATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACA 4088664 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || |||||||| || Sbjct 4088665 TCCAGAAAGAGTCCACCCTGCATCTGGT 4088692 Score = 163 bits (180), Expect = 7e-35 Identities = 170/221 (77%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| || || || ||||| || |||||||| || ||| Sbjct 4088031 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTGGA--GCCCAGTG 4088088 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| ||||| || ||||| || ||||| ||||||| Sbjct 4088089 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAGC 4088148 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| |||||||| | |||||| | || || ||| Sbjct 4088149 AGAGGCTCATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACA 4088208 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || || | || ||| Sbjct 4088209 TCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTGAGA 4088249 Score = 156 bits (172), Expect = 1e-32 Identities = 177/235 (75%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| | ||||| | || |||||||| || || || || || || |||||| | |||| Sbjct 4087792 AGGTCACAATGC---AGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGG 4087848 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| ||||||||||||| ||||| ||||| ||||| || ||||| || Sbjct 4087849 TGGA--GCCCAGCGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCAT 4087906 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||||| |||||||| | || ||||||||||| || ||||| |||||||| | ||||| Sbjct 4087907 TCCTCCCGACCAGCAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCT 4087966 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | | || || ||| |||| ||||| || || ||||| || || || | || ||| Sbjct 4087967 TTCTGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTGAGA 4088021 Score = 154 bits (170), Expect = 4e-32 Identities = 168/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| || || || |||||||| |||||||| || ||| Sbjct 4088259 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 4088316 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| ||||| || ||||| || ||||| ||||||| Sbjct 4088317 ACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAGC 4088376 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | |||||| | || || ||| Sbjct 4088377 AGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACA 4088436 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || || | || ||| Sbjct 4088437 TCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTGAGA 4088477 >seq188 Length=611413 Score = 154 bits (170), Expect = 4e-32 Identities = 168/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || ||||||||||||||||| || ||| Sbjct 74108 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGA--GCCCAGTG 74051 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 74050 ACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGC 73991 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| ||||| || | || || |||| || ||| Sbjct 73990 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAACA 73931 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || || | |||||| Sbjct 73930 TCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGA 73890 Score = 154 bits (170), Expect = 4e-32 Identities = 168/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||||||||| | || || || || ||||||||||||||||| || ||| Sbjct 74336 CAGATCTTCGTGAAAACCTTAACTGGCAAGACCATCACCCTCGAGGTGGA--GCCCAGTG 74279 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| |||||| |||||||| || || ||||| || ||||||| Sbjct 74278 ACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGC 74219 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| ||||| || | || || |||| || ||| Sbjct 74218 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAACA 74159 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || || | |||||| Sbjct 74158 TCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGA 74118 Score = 143 bits (158), Expect = 6e-29 Identities = 158/207 (76%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || ||||||||||||||||| || ||| Sbjct 73880 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGA--GCCCAGTG 73823 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 73822 ACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGC 73763 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 73762 AGAGGCTGATATTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 73703 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || ||||| |||| Sbjct 73702 TCCAGAAGGAGTCCACCCTGCA-CTTG 73677 >seq7 Length=173684459 Score = 149 bits (164), Expect = 2e-30 Identities = 159/207 (77%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || || || || || |||||||||||||||| ||| || | Sbjct 24644876 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGG--AGCCCAGTG 24644933 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 24644934 ACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 24644993 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||| | |||||||| |||||||| | || || |||| || ||| Sbjct 24644994 AGAGGCTGATCTTTGCCAGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 24645053 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || ||||| |||| Sbjct 24645054 TCCAGAAGGAGTCCACCCTGCA-CTTG 24645079 Score = 141 bits (156), Expect = 2e-28 Identities = 161/215 (75%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || || || || || ||||| |||||||| ||| ||| || Sbjct 2561315 CAGATCTTCGTGAAAACCCTTAC-GGGAAGACCATCACGCTCGAGGTTGAACCCTCGGAT 2561257 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || ||||| || |||||||| ||||| || |||||| Sbjct 2561256 ACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 2561197 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || || || || || || ||||||||| ||||| | | || || ||| | Sbjct 2561196 AGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGATGGACTTTATCTGACTACAACATT 2561137 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || || ||||| |||||||| Sbjct 2561136 CAAAAGGAGTCTACTCTTCACCTTGTGTTGAGACT 2561102 >seq2 Length=174332312 Score = 134 bits (148), Expect = 3e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 177954 ACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAG 178013 || ||||||||| ||||||| ||| ||||||||||| || |||| ||||| ||| Sbjct 24775547 ACCATCACCCTCTAGGTGGAGAGCAGCGACACCATCGACAATCTCAAGGCCAAGATCCAG 24775606 Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 || || ||||| || ||||| |||||||| | || |||||||| || || ||||| ||| Sbjct 24775607 GATAAGGAAGGCATTCCTCCTGACCAGCAGAGGCTCATCTTCGCTGGCAAGCAGCTGGAA 24775666 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| | |||||| | || || ||| |||| ||||| || || |||| ||||| || Sbjct 24775667 GATGGCCGTACTCTTTCTGACTACAACATCCAGAAAGAGTCTACCTTGCACCTTGTCCTG 24775726 Query 178134 AGACTCAGA 178142 | || ||| Sbjct 24775727 CGTCTGAGA 24775735 >seq14 Length=163896628 Score = 131 bits (144), Expect = 4e-25 Identities = 155/207 (75%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || || || || || |||||||||||||||| ||| || | Sbjct 150522075 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGG--AGCCCAGTG 150522018 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||| |||||||||| ||||| |||||||| || || | || || |||||| Sbjct 150522017 ACACCATCTAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCACGCCCCCTTACCAGC 150521958 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || || || ||||||||| | || || |||| || ||| Sbjct 150521957 AGAGGCTGATCTTTGCTGGCAAGCACCTGGAAGATGGACGCACCCTGTCCGACTACAACA 150521898 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 ||| ||||| || || ||||| |||| Sbjct 150521897 TCCCGAAAGAGTCCACTCTGCA-CTTG 150521872 >seq15 Length=109054052 Score = 102 bits (112), Expect = 2e-16 Identities = 148/203 (73%), Gaps = 7/203 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||| |||||| | || || ||||| |||||||| ||||| |||| ||| Sbjct 17280122 CAAATCTTCCTGAAAATCTTAACTGGCAAAACCATCACCCTTGAGGTT--AAGCCCAGTG 17280179 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||| | ||||| |||| |||| ||| || ||||||||||| ||| | ||| || Sbjct 17280180 ACACCGTTGAGAATGTCAGGCAAA-GATCCAAGACAAAGAAGGCATCGCCTGTGACTAGA 17280238 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 || | | |||||| | || ||||| || ||||||||| | || |||| | || || ||| Sbjct 17280239 AAAGGTTGATCTTCACTGGGAAACACCTGGAAGATGGATGTAC-CTTGTCTGACTACAAC 17280297 Query 178101 GTCCAAAAAGAATCAACACTGCA 178123 |||| || || || || || || Sbjct 17280298 ATCCAGAAGGAGTCCACTCTCCA 17280320 >seq121 Length=1052913 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 11/216 (5%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| | || || || || |||||||||||||||| | | ||| Sbjct 437217 CAGATCTTCGTGAAAACCTTAACGGGCAAGACCGTCACCCTCGAGGTGGAGCCCGCTGAC 437158 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC---------- 178033 ||||||| ||||||| | ||||| |||||||| || || ||||| || Sbjct 437157 ACCATCGCGAACGTCGAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCCACACACACA 437098 Query 178034 GGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGA 178093 ||||||| | || ||||| ||||| || ||||| |||||||| | || | |||| Sbjct 437097 CAACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCAC-CCTGCCAG 437039 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || ||| |||| | || | || ||||| || || Sbjct 437038 CTACAACCTCCAGACGGAGCCCACCCTGCACCTGGT 437003 >seq17 Length=85008467 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/127 (76%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 177951 AAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGA 178008 || || |||||||| ||||| || || ||| |||||||| |||| |||||| || | Sbjct 28824797 AAGACCATCACCCTTGAGGTCGA--GCCCAGTGACACCATCAAGAATGTCAAAGCCAAAA 28824740 Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 | || ||||||||||| |||| || |||||||| | || || || || || ||||||| Sbjct 28824739 TCCAAGACAAAGAAGGCATCCTGCCTGACCAGCAGTGTCTGATTTTTGCTGGCAAACAGC 28824680 Query 178069 TCGAAGA 178075 | || || Sbjct 28824679 TGGAGGA 28824673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203681214685754