Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq498 201 1e-46 seq1345 183 3e-41 seq78 96.9 4e-15 >seq498 Length=2542268 Score = 201 bits (222), Expect = 1e-46 Identities = 402/594 (68%), Gaps = 25/594 (4%) Strand=Plus/Plus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 || || || |||||||| || || || || || ||||| |||||||||||||||||||| Sbjct 2186617 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGC 2186676 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065 || || |||||||| | ||||||||| ||| | ||||| | ||| ||||| | | | Sbjct 2186677 TCATTGGAAAATGTAAGGCCGGGCATCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTG 2186736 Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125 || || || ||||| || || || |||| ||||| |||| | ||||| ||| Sbjct 2186737 AAAGAACCG---AAGAAGATGCCTTCCACGGCGGCAAAGGCGACAACACGTTCTCTGTAT 2186793 Query 17126 GTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCC 17185 || || ||||||| | |||||| | |||| ||||| || | ||| | || | Sbjct 2186794 GTAGCCTCTTTGTCCCAAATCCAACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGC 2186853 Query 17186 ATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAG-GTCGATTATATACGTATC 17244 ||||||||||| || | || | | ||| | |||| ||| || | || || || || Sbjct 2186854 ATCGTTTCTATAGCAATGAAGAGATACTCCCTCTCCT-TAGAATCTTTAATGTAGGTGTC 2186912 Query 17245 GATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA 17304 || || || ||||||||||| || |||||||| |||||||| || || || || || || Sbjct 2186913 AATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAA 2186972 Query 17305 GCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCAC 17364 || ||||| || | | ||||||||| | ||||| ||| | || || || || Sbjct 2186973 ACAGCGGGCCTCTGTGACTTGAACTTCTTGGCTAAATCGCTCC---AAGTTCTCATTGAC 2187029 Query 17365 GATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGG 17424 |||| ||| ||||| ||||| || || | || || |||| | | || | || Sbjct 2187030 TATGCTGTCACTCGCTGCGAAGAAAGCACGAACGTGAGGTATAAAATGTCTCTCCT-GGG 2187088 Query 17425 TGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAA 17484 | | ||| | | ||||| || | ||||||||| | ||| ||||| Sbjct 2187089 TTTCAGAGCTCCCCAGTGCTGGATATCTTTGGAAA----------------GGTTCAAAA 2187132 Query 17485 ACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||| | || || || ||||| | ||| ||||||| ||||| ||||| || Sbjct 2187133 GGAGGCCTCCGCTTTCTTGTACATGTGCCAGATATCATGGTATTTGATGGGAAA 2187186 >seq1345 Length=786133 Score = 183 bits (202), Expect = 3e-41 Identities = 560/867 (65%), Gaps = 38/867 (4%) Strand=Plus/Minus Query 16675 TTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTC 16734 |||||| |||| || | || || || ||||| || || | ||||| || ||||| || Sbjct 221205 TTGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTC 221146 Query 16735 CATGAAATCAAAAGGATTAGTAGCT--GAAAATATTTTAGAGTACCCCAGTTCGGCGATT 16792 |||||| ||||| | ||| || |||||| || | | ||||||| || || Sbjct 221145 CATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAA--ACCCCAGCTCCAGCATC 221088 Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 | || ||| | |||||||| || || || ||| | | || |||||| || ||||| Sbjct 221087 AGCCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGC 221028 Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 || || | || ||||| | || |||||||| | || | | |||| || Sbjct 221027 TTCACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTATT 220968 Query 16913 CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAA 16972 || |||| | ||| | || | ||| || || || |||||||| || || || Sbjct 220967 TTACTTACTCTCTGCTCCTATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAG 220908 Query 16973 TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATC 17032 || |||||||| ||||| |||||||||||||| || || |||||||| | |||||||| Sbjct 220907 TCACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATA 220848 Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092 ||| || ||||| | ||| ||||| | || || || ||||||||||| || || || Sbjct 220847 AGTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCC 220788 Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTC 17152 |||| ||||| || | | | ||| | || || || |||||| Sbjct 220787 ACGGCGGCAAAGGCCACAACACATTCTCCATATGTAGCCCCTTTGT-------------- 220742 Query 17153 TGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTC 17212 |||| | || | |||| |||| |||| || || || || | | | Sbjct 220741 ---CCCCAGT--GC---------AACGCAAGGCATCTTTTCAATAGCATTGAAGAGATAC 220696 Query 17213 TCTTTTTCCTGTAGGTCGATTATAT-ACGTATCGATGAGTAGGCTGTACATTTCGGAGTG 17271 || | |||| | || | | | | || || || || || ||||||||||| || || Sbjct 220695 TCCCTCTCCT-----TGGAATCTTTAATGTGTCAATAAGGAGACTGTACATTTCAGAATG 220641 Query 17272 TATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 ||| || || ||| | || || || || || || || ||| | || | | ||||||||| Sbjct 220640 TATATTTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTC 220581 Query 17332 CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 | |||| ||| | | | || || || || |||| ||| || || || || || || Sbjct 220580 TTGGCTGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGC 220521 Query 17392 CAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATC 17451 | | ||| || | || | | || ||| | ||| | ||||| || | ||| Sbjct 220520 CCGAACATGAGGTATAACATGTCTCTCACTGGGTTTCAGAGCTTCCCAGTACTGAATATC 220461 Query 17452 TTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATT 17511 ||||| | ||||| || || | |||||||| ||| | | || || ||||| | Sbjct 220460 CTTGGAAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACATCTG 220401 Query 17512 CCAAATATCATTGTATTGTATGGGGAA 17538 ||| ||||||| ||||| ||||| || Sbjct 220400 CCAGATATCATGGTATTTGATGGGAAA 220374 >seq78 Length=6419775 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 ||||||||||||||||||| || || |||||||| | ||||||||| ||| || |||| Sbjct 5585561 CCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCAGTCCCCGCTTCT 5585620 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGG 17096 | | ||| ||||| | ||||| || ||||| ||||| || || || |||| Sbjct 5585621 TGAGCCAGAATATGGATGCGAAAGAACCAGAGAAGAAGATGCCTTCCACGG 5585671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517345562156280