Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq498 201 1e-46
seq1345 181 1e-40
seq78 96.9 4e-15
>seq498
Length=2542268
Score = 201 bits (222), Expect = 1e-46
Identities = 313/446 (70%), Gaps = 6/446 (1%)
Strand=Plus/Plus
Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243
||||| || ||||| || || || ||||| || |||| || |||||||||||||||||
Sbjct 2186617 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGC 2186676
Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303
|| |||||||| || | || ||||| ||| | ||||| | ||||||||| | |
Sbjct 2186677 TCATTGGAAAATGTAAGGCCGGGCATCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTG 2186736
Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363
|| || || ||||| || || || || | ||||| |||| | ||||| |||
Sbjct 2186737 AAAGAACCG---AAGAAGATGCCTTCCACGGCGGCAAAGGCGACAACACGTTCTCTGTAT 2186793
Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423
||||| ||||| | | |||||| | |||| ||||| || | || | | || |
Sbjct 2186794 GTAGCCTCTTTGTCCCAAATCCAACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGC 2186853
Query 16424 ATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCA 16483
||||||||||| || | || | | ||| | |||| | ||| | || || || |||
Sbjct 2186854 ATCGTTTCTATAGCAATGAAGAGATACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCA 2186913
Query 16484 ATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAG 16543
|| || | |||||||||||| || |||||||| || ||||| || || || ||||||||
Sbjct 2186914 ATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAA 2186973
Query 16544 CATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACG 16603
|| || ||||| | | ||| ||||| | |||||| | ||| ||||||||| ||
Sbjct 2186974 CAGCGGGCCTCTGTGACTTGAACTTCTTGGCTAAATCG---CTCCAAGTTCTCATTGACT 2187030
Query 16604 ATACCGTCACTTGCAGCAAAAAACGC 16629
|| | |||||| || || || || ||
Sbjct 2187031 ATGCTGTCACTCGCTGCGAAGAAAGC 2187056
>seq1345
Length=786133
Score = 181 bits (200), Expect = 1e-40
Identities = 401/603 (67%), Gaps = 40/603 (7%)
Strand=Plus/Minus
Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243
||||| || ||||| || || || ||||| ||||||| || || ||||||||||||||
Sbjct 220934 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAATGTAAGCCCTCATCTCTGCTGATAAGC 220875
Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303
|| |||||||| || | || ||||| ||| || ||||| | ||||||||| | |||
Sbjct 220874 TCATTGGAAAATGTAAGGCCGGGCATAAGTCCCCGCTTCTTCAGCCAGAATATTGATGCA 220815
Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363
|| || || |||||||| || || || || | ||||| || | | | ||| | ||
Sbjct 220814 AAAGAACCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGGCCACAACACATTCTCCATAT 220755
Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423
||||| ||| ||| |||| || | ||| |
Sbjct 220754 GTAGCCCCTT-----------------TGTCCCCA-----------GTGCAACGCAAGGC 220723
Query 16424 ATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCT--GAATATCGATTATATACGTAT 16481
||| |||| || || || || | | ||| | |||| |||| | ||| | || |
Sbjct 220722 ATCTTTTCAATAGCATTGAAGAGATACTCCCTCTCCTTGGAATCT---TTA---ATGTGT 220669
Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541
|||| || | |||||||||||| || ||||| || |||||| | || || || |||||||
Sbjct 220668 CAATAAGGAGACTGTACATTTCAGAATGTATATTTTCTATGCCAATTTGGAAGCCATAGA 220609
Query 16542 AGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCA 16601
| || || |||| | | ||| ||||| | ||| ||| | ||| ||||||||| |
Sbjct 220608 AACAGCGGACCTCTGTGACTTGAACTTCTTGGCTGAATAGTTTCACCAAGTTCTCATTGA 220549
Query 16602 CGATACCGTCACTTGCAGCAAAAAACGCC--AATATGTGCTTAATGAAATATTTTTCGTC 16659
| || | ||||||||| ||||| || ||| || ||| | | || | || | | ||
Sbjct 220548 CTATGCTGTCACTTGCTGCAAAGAAAGCCCGAACATGAGGT--ATAACATGTCTCTCACT 220491
Query 16660 AGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA 16719
| | | ||| | ||| | | | ||| ||||| | ||||| || || | ||||||
Sbjct 220490 GGGTTTCAGAGCTTCCCAGTACTGAATATCCTTGGAAAGGTCCACCTCCTCAGCCGTCCA 220431
Query 16720 AAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATAC 16779
|||| ||| | | || || ||||| | ||| ||||||| ||||| |||||||| |
Sbjct 220430 AAAGGAGGCCTCATCTTTCTTGTACATCTGCCAGATATCATGGTATTTGATGGGAAAGAT 220371
Query 16780 GAC 16782
|||
Sbjct 220370 GAC 220368
>seq78
Length=6419775
Score = 96.9 bits (106), Expect = 4e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531
|| || || |||||||| | |||||||||||| || |||||||| || ||||| || ||
Sbjct 5587048 ATGTAGGTGTCAATCAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 5587107
Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591
|| |||||||| || || ||||||| | ||| |||||| | |||||| ||| || ||
Sbjct 5587108 AAGCCATAGAAACAGCGGGCCTCCGTGACTTGAACTTCCTGGCTAAATCGCTCCACCTGG 5587167
Query 16592 T 16592
|
Sbjct 5587168 T 5587168
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511216731941720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |