Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq498 201 1e-46 seq1345 181 1e-40 seq78 96.9 4e-15 >seq498 Length=2542268 Score = 201 bits (222), Expect = 1e-46 Identities = 313/446 (70%), Gaps = 6/446 (1%) Strand=Plus/Plus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 ||||| || ||||| || || || ||||| || |||| || ||||||||||||||||| Sbjct 2186617 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGC 2186676 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 || |||||||| || | || ||||| ||| | ||||| | ||||||||| | | Sbjct 2186677 TCATTGGAAAATGTAAGGCCGGGCATCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTG 2186736 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 || || || ||||| || || || || | ||||| |||| | ||||| ||| Sbjct 2186737 AAAGAACCG---AAGAAGATGCCTTCCACGGCGGCAAAGGCGACAACACGTTCTCTGTAT 2186793 Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423 ||||| ||||| | | |||||| | |||| ||||| || | || | | || | Sbjct 2186794 GTAGCCTCTTTGTCCCAAATCCAACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGC 2186853 Query 16424 ATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCA 16483 ||||||||||| || | || | | ||| | |||| | ||| | || || || ||| Sbjct 2186854 ATCGTTTCTATAGCAATGAAGAGATACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCA 2186913 Query 16484 ATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAG 16543 || || | |||||||||||| || |||||||| || ||||| || || || |||||||| Sbjct 2186914 ATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAA 2186973 Query 16544 CATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACG 16603 || || ||||| | | ||| ||||| | |||||| | ||| ||||||||| || Sbjct 2186974 CAGCGGGCCTCTGTGACTTGAACTTCTTGGCTAAATCG---CTCCAAGTTCTCATTGACT 2187030 Query 16604 ATACCGTCACTTGCAGCAAAAAACGC 16629 || | |||||| || || || || || Sbjct 2187031 ATGCTGTCACTCGCTGCGAAGAAAGC 2187056 >seq1345 Length=786133 Score = 181 bits (200), Expect = 1e-40 Identities = 401/603 (67%), Gaps = 40/603 (7%) Strand=Plus/Minus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 ||||| || ||||| || || || ||||| ||||||| || || |||||||||||||| Sbjct 220934 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAATGTAAGCCCTCATCTCTGCTGATAAGC 220875 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 || |||||||| || | || ||||| ||| || ||||| | ||||||||| | ||| Sbjct 220874 TCATTGGAAAATGTAAGGCCGGGCATAAGTCCCCGCTTCTTCAGCCAGAATATTGATGCA 220815 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 || || || |||||||| || || || || | ||||| || | | | ||| | || Sbjct 220814 AAAGAACCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGGCCACAACACATTCTCCATAT 220755 Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423 ||||| ||| ||| |||| || | ||| | Sbjct 220754 GTAGCCCCTT-----------------TGTCCCCA-----------GTGCAACGCAAGGC 220723 Query 16424 ATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCT--GAATATCGATTATATACGTAT 16481 ||| |||| || || || || | | ||| | |||| |||| | ||| | || | Sbjct 220722 ATCTTTTCAATAGCATTGAAGAGATACTCCCTCTCCTTGGAATCT---TTA---ATGTGT 220669 Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541 |||| || | |||||||||||| || ||||| || |||||| | || || || ||||||| Sbjct 220668 CAATAAGGAGACTGTACATTTCAGAATGTATATTTTCTATGCCAATTTGGAAGCCATAGA 220609 Query 16542 AGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCA 16601 | || || |||| | | ||| ||||| | ||| ||| | ||| ||||||||| | Sbjct 220608 AACAGCGGACCTCTGTGACTTGAACTTCTTGGCTGAATAGTTTCACCAAGTTCTCATTGA 220549 Query 16602 CGATACCGTCACTTGCAGCAAAAAACGCC--AATATGTGCTTAATGAAATATTTTTCGTC 16659 | || | ||||||||| ||||| || ||| || ||| | | || | || | | || Sbjct 220548 CTATGCTGTCACTTGCTGCAAAGAAAGCCCGAACATGAGGT--ATAACATGTCTCTCACT 220491 Query 16660 AGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA 16719 | | | ||| | ||| | | | ||| ||||| | ||||| || || | |||||| Sbjct 220490 GGGTTTCAGAGCTTCCCAGTACTGAATATCCTTGGAAAGGTCCACCTCCTCAGCCGTCCA 220431 Query 16720 AAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATAC 16779 |||| ||| | | || || ||||| | ||| ||||||| ||||| |||||||| | Sbjct 220430 AAAGGAGGCCTCATCTTTCTTGTACATCTGCCAGATATCATGGTATTTGATGGGAAAGAT 220371 Query 16780 GAC 16782 ||| Sbjct 220370 GAC 220368 >seq78 Length=6419775 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || |||||||| | |||||||||||| || |||||||| || ||||| || || Sbjct 5587048 ATGTAGGTGTCAATCAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 5587107 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || |||||||| || || ||||||| | ||| |||||| | |||||| ||| || || Sbjct 5587108 AAGCCATAGAAACAGCGGGCCTCCGTGACTTGAACTTCCTGGCTAAATCGCTCCACCTGG 5587167 Query 16592 T 16592 | Sbjct 5587168 T 5587168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511216731941720