Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1542 237 1e-57 seq1462 237 1e-57 seq144 132 3e-26 seq541 125 5e-24 seq4352 113 3e-20 seq6307 107 1e-18 >seq1542 Length=221630 Score = 237 bits (262), Expect = 1e-57 Identities = 304/418 (73%), Gaps = 6/418 (1%) Strand=Plus/Minus Query 4031 AAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAA 4090 |||| |||| ||| |||||| | |||||| ||| || | | |||| |||||| |||| Sbjct 211899 AAAGCACACCTGGGTATTCTGGGAGAAGTTTTTATCTCCCCAAATCAGTTTCTGGGAAAA 211840 Query 4091 AGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGAT 4150 |||||| |||| | | ||||||||||| |||||||||||||| || | || ||| | Sbjct 211839 CCATGTCACTTTCAGATTTCTGCATGATCCTTGTCACAAACAGTTTGAGGTGGCCTGGCT 211780 Query 4151 AACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTAT 4210 | |||| ||| | ||| | ||| |||| |||| | |||||||| || ||||||||| Sbjct 211779 GATTCATGGCTCCCTTACAAACAAAACTGCCTCTGGCTGTCCAGACCTTGCCTACTTTAT 211720 Query 4211 TTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAAT 4270 || ||||||||| ||||| |||||||||| |||| || | ||| || || | ||||| Sbjct 211719 CTGGTAATTCTGGTTGTTCAATAAGTTTTAAGGCATTGTCCAGACTTTTGGCAAGAAAAT 211660 Query 4271 GAGCTCT--ATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTT 4328 ||||||| ||||| | ||||| || || | ||||| | | ||||||||| | || Sbjct 211659 GAGCTCTCCTTGTGGCGGTTCCTTGAGGTCTCTATTGAGAGCTATGTTAATTCTGTCCTT 211600 Query 4329 TAAAGGCCGGTTCTT----CTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTA 4384 ||| ||| || || ||||||||| |||| ||| | || ||| ||| | | | Sbjct 211599 TAACAGCCCATTTTTCCCCCTCAGGAATGGAGATCCAGGATTTCCCACCTGTAACCTCAA 211540 Query 4385 AATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATC 4442 ||||||||| || || ||||| | || |||||||||||||| | ||| || || Sbjct 211539 GGTTCTGTTTACCTTCCACTGAAGAGGCTGTGGTCATTCTTTGGAAGTATTTGAACTC 211482 >seq1462 Length=144545 Score = 237 bits (262), Expect = 1e-57 Identities = 304/418 (73%), Gaps = 6/418 (1%) Strand=Plus/Minus Query 4031 AAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAA 4090 |||| |||| ||| |||||| | |||||| ||| || | | |||| |||||| |||| Sbjct 4592 AAAGCACACCTGGGTATTCTGGGAGAAGTTTTTATCTCCCCAAATCAGTTTCTGGGAAAA 4533 Query 4091 AGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGAT 4150 |||||| |||| | | ||||||||||| |||||||||||||| || | || ||| | Sbjct 4532 CCATGTCACTTTCAGATTTCTGCATGATCCTTGTCACAAACAGTTTGAGGTGGCCTGGCT 4473 Query 4151 AACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTAT 4210 | |||| ||| | ||| | ||| |||| |||| | |||||||| || ||||||||| Sbjct 4472 GATTCATGGCTCCCTTACAAACAAAACTGCCTCTGGCTGTCCAGACCTTGCCTACTTTAT 4413 Query 4211 TTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAAT 4270 || ||||||||| ||||| |||||||||| |||| || | ||| || || | ||||| Sbjct 4412 CTGGTAATTCTGGTTGTTCAATAAGTTTTAAGGCATTGTCCAGACTTTTGGCAAGAAAAT 4353 Query 4271 GAGCTCT--ATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTT 4328 ||||||| ||||| | ||||| || || | ||||| | | ||||||||| | || Sbjct 4352 GAGCTCTCCTTGTGGCGGTTCCTTGAGGTCTCTATTGAGAGCTATGTTAATTCTGTCCTT 4293 Query 4329 TAAAGGCCGGTTCTT----CTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTA 4384 ||| ||| || || ||||||||| |||| ||| | || ||| ||| | | | Sbjct 4292 TAACAGCCCATTTTTCCCCCTCAGGAATGGAGATCCAGGATTTCCCACCTGTAACCTCAA 4233 Query 4385 AATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATC 4442 ||||||||| || || ||||| | || |||||||||||||| | ||| || || Sbjct 4232 GGTTCTGTTTACCTTCCACTGAAGAGGCTGTGGTCATTCTTTGGAAGTATTTGAACTC 4175 >seq144 Length=4920231 Score = 132 bits (146), Expect = 3e-26 Identities = 111/135 (82%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 4149 ATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTT 4208 ||||||| || | | || || |||||||| ||||||| |||||| |||||||||||||| Sbjct 4551477 ATAACTC-TACTTACCTTGTAAACAGAACTGCCTCCAACTATCCAAACCATGTCTACTTT 4551419 Query 4209 ATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAA 4268 ||||||||| ||||| || || |||||||||| |||||||| | ||| || || | ||| Sbjct 4551418 ATTTGCTAACTCTGGTTGCTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAA 4551359 Query 4269 ATGAGCTCTATGTGG 4283 |||||||| ||||| Sbjct 4551358 ATGAGCTCCTTGTGG 4551344 Score = 113 bits (124), Expect = 3e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||||| | ||||| ||||| ||||| ||||||| |||||| |||||||| Sbjct 4554489 AAGTTTATATTTCTCCAAATCAATGTCTGGGAAAAATGTGTCACTTTCAAATTCTTGCAT 4554430 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| | |||| || ||| | | |||| ||||| || | ||| | Sbjct 4554429 GATCCTTGTCACAAAGAGTCTGAGATGGCCTGGCTTATTCATGGCTTCCTTTAAAACAAA 4554370 Query 4176 AC 4177 || Sbjct 4554369 AC 4554368 Score = 107 bits (118), Expect = 1e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || |||||||||| | |||||||||| | |||||||| || ||||||||||| Sbjct 4541638 CTTGAGCTCTCTGCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 4541579 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || || ||||||||||| | |||||||||| || Sbjct 4541578 AATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGATTCTGTTTACCT 4541530 >seq541 Length=708737 Score = 125 bits (138), Expect = 5e-24 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 26936 TTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTT 26995 |||| | || | | | ||||||| | ||||| |||||||| || ||| |||||||| Sbjct 684757 TTAGGCCACGTGGCGGACAATGGAGGAGACGCAGGTGCAGCCCACGCCCACCAGCATCTT 684816 Query 26996 CTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTG 27055 ||| | || || | |||||| | | || | | |||| || || |||||||| Sbjct 684817 CTCCACCCGGAAGGTGAGGGGGCAGTTCTCAGGCTCCCTCCGCAGGACCAGGATCTCTTG 684876 Query 27056 TTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAA 27115 ||||| | || ||||||||||||| ||| | ||||| |||||||| ||||| | Sbjct 684877 CTGGATGAGAACAGAGTTCATGTGGTGGTCCAGCTTCCCCTCAGCATTGACACAGCGCTG 684936 Query 27116 GTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||| |||| ||| ||||| ||||| || || |||||||| | || |||||||| Sbjct 684937 GTGGCGGCACTGTGCCTCCCAGATCACGGAAGGGTATCTATCAGGGTCCTCATTGCG 684993 >seq4352 Length=11160 Score = 113 bits (124), Expect = 3e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||||| | ||||| ||||| ||||| ||||||| |||||| |||||||| Sbjct 5083 AAGTTTATATTTCTCCAAATCAATGTCTGGGAAAAATGTGTCACTTTCAAATTCTTGCAT 5024 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| | |||| || ||| | | |||| ||||| || | ||| | Sbjct 5023 GATCCTTGTCACAAAGAGTCTGAGATGGCCTGGCTTATTCATGGCTTCCTTTAAAACAAA 4964 Query 4176 AC 4177 || Sbjct 4963 AC 4962 >seq6307 Length=6747 Score = 107 bits (118), Expect = 1e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || |||||||||| | |||||||||| | |||||||| || ||||||||||| Sbjct 2084 CTTGAGCTCTCTGCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 2143 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || || ||||||||||| | |||||||||| || Sbjct 2144 AATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGATTCTGTTTACCT 2192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361115062598171