Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq1542 237 1e-57
seq1462 237 1e-57
seq144 132 3e-26
seq541 125 5e-24
seq4352 113 3e-20
seq6307 107 1e-18
>seq1542
Length=221630
Score = 237 bits (262), Expect = 1e-57
Identities = 304/418 (73%), Gaps = 6/418 (1%)
Strand=Plus/Minus
Query 4031 AAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAA 4090
|||| |||| ||| |||||| | |||||| ||| || | | |||| |||||| ||||
Sbjct 211899 AAAGCACACCTGGGTATTCTGGGAGAAGTTTTTATCTCCCCAAATCAGTTTCTGGGAAAA 211840
Query 4091 AGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGAT 4150
|||||| |||| | | ||||||||||| |||||||||||||| || | || ||| |
Sbjct 211839 CCATGTCACTTTCAGATTTCTGCATGATCCTTGTCACAAACAGTTTGAGGTGGCCTGGCT 211780
Query 4151 AACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTAT 4210
| |||| ||| | ||| | ||| |||| |||| | |||||||| || |||||||||
Sbjct 211779 GATTCATGGCTCCCTTACAAACAAAACTGCCTCTGGCTGTCCAGACCTTGCCTACTTTAT 211720
Query 4211 TTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAAT 4270
|| ||||||||| ||||| |||||||||| |||| || | ||| || || | |||||
Sbjct 211719 CTGGTAATTCTGGTTGTTCAATAAGTTTTAAGGCATTGTCCAGACTTTTGGCAAGAAAAT 211660
Query 4271 GAGCTCT--ATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTT 4328
||||||| ||||| | ||||| || || | ||||| | | ||||||||| | ||
Sbjct 211659 GAGCTCTCCTTGTGGCGGTTCCTTGAGGTCTCTATTGAGAGCTATGTTAATTCTGTCCTT 211600
Query 4329 TAAAGGCCGGTTCTT----CTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTA 4384
||| ||| || || ||||||||| |||| ||| | || ||| ||| | | |
Sbjct 211599 TAACAGCCCATTTTTCCCCCTCAGGAATGGAGATCCAGGATTTCCCACCTGTAACCTCAA 211540
Query 4385 AATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATC 4442
||||||||| || || ||||| | || |||||||||||||| | ||| || ||
Sbjct 211539 GGTTCTGTTTACCTTCCACTGAAGAGGCTGTGGTCATTCTTTGGAAGTATTTGAACTC 211482
>seq1462
Length=144545
Score = 237 bits (262), Expect = 1e-57
Identities = 304/418 (73%), Gaps = 6/418 (1%)
Strand=Plus/Minus
Query 4031 AAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAA 4090
|||| |||| ||| |||||| | |||||| ||| || | | |||| |||||| ||||
Sbjct 4592 AAAGCACACCTGGGTATTCTGGGAGAAGTTTTTATCTCCCCAAATCAGTTTCTGGGAAAA 4533
Query 4091 AGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGAT 4150
|||||| |||| | | ||||||||||| |||||||||||||| || | || ||| |
Sbjct 4532 CCATGTCACTTTCAGATTTCTGCATGATCCTTGTCACAAACAGTTTGAGGTGGCCTGGCT 4473
Query 4151 AACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTAT 4210
| |||| ||| | ||| | ||| |||| |||| | |||||||| || |||||||||
Sbjct 4472 GATTCATGGCTCCCTTACAAACAAAACTGCCTCTGGCTGTCCAGACCTTGCCTACTTTAT 4413
Query 4211 TTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAAT 4270
|| ||||||||| ||||| |||||||||| |||| || | ||| || || | |||||
Sbjct 4412 CTGGTAATTCTGGTTGTTCAATAAGTTTTAAGGCATTGTCCAGACTTTTGGCAAGAAAAT 4353
Query 4271 GAGCTCT--ATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTT 4328
||||||| ||||| | ||||| || || | ||||| | | ||||||||| | ||
Sbjct 4352 GAGCTCTCCTTGTGGCGGTTCCTTGAGGTCTCTATTGAGAGCTATGTTAATTCTGTCCTT 4293
Query 4329 TAAAGGCCGGTTCTT----CTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTA 4384
||| ||| || || ||||||||| |||| ||| | || ||| ||| | | |
Sbjct 4292 TAACAGCCCATTTTTCCCCCTCAGGAATGGAGATCCAGGATTTCCCACCTGTAACCTCAA 4233
Query 4385 AATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATC 4442
||||||||| || || ||||| | || |||||||||||||| | ||| || ||
Sbjct 4232 GGTTCTGTTTACCTTCCACTGAAGAGGCTGTGGTCATTCTTTGGAAGTATTTGAACTC 4175
>seq144
Length=4920231
Score = 132 bits (146), Expect = 3e-26
Identities = 111/135 (82%), Gaps = 1/135 (1%)
Strand=Plus/Minus
Query 4149 ATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTT 4208
||||||| || | | || || |||||||| ||||||| |||||| ||||||||||||||
Sbjct 4551477 ATAACTC-TACTTACCTTGTAAACAGAACTGCCTCCAACTATCCAAACCATGTCTACTTT 4551419
Query 4209 ATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAA 4268
||||||||| ||||| || || |||||||||| |||||||| | ||| || || | |||
Sbjct 4551418 ATTTGCTAACTCTGGTTGCTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAA 4551359
Query 4269 ATGAGCTCTATGTGG 4283
|||||||| |||||
Sbjct 4551358 ATGAGCTCCTTGTGG 4551344
Score = 113 bits (124), Expect = 3e-20
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115
|||||| |||||||| | ||||| ||||| ||||| ||||||| |||||| ||||||||
Sbjct 4554489 AAGTTTATATTTCTCCAAATCAATGTCTGGGAAAAATGTGTCACTTTCAAATTCTTGCAT 4554430
Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175
|||||| |||||||| ||| | |||| || ||| | | |||| ||||| || | ||| |
Sbjct 4554429 GATCCTTGTCACAAAGAGTCTGAGATGGCCTGGCTTATTCATGGCTTCCTTTAAAACAAA 4554370
Query 4176 AC 4177
||
Sbjct 4554369 AC 4554368
Score = 107 bits (118), Expect = 1e-18
Identities = 89/109 (82%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| || || |||||||||| | |||||||||| | |||||||| || |||||||||||
Sbjct 4541638 CTTGAGCTCTCTGCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 4541579
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||| |||||||| || || ||||||||||| | |||||||||| ||
Sbjct 4541578 AATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGATTCTGTTTACCT 4541530
>seq541
Length=708737
Score = 125 bits (138), Expect = 5e-24
Identities = 170/237 (72%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 26936 TTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTT 26995
|||| | || | | | ||||||| | ||||| |||||||| || ||| ||||||||
Sbjct 684757 TTAGGCCACGTGGCGGACAATGGAGGAGACGCAGGTGCAGCCCACGCCCACCAGCATCTT 684816
Query 26996 CTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTG 27055
||| | || || | |||||| | | || | | |||| || || ||||||||
Sbjct 684817 CTCCACCCGGAAGGTGAGGGGGCAGTTCTCAGGCTCCCTCCGCAGGACCAGGATCTCTTG 684876
Query 27056 TTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAA 27115
||||| | || ||||||||||||| ||| | ||||| |||||||| ||||| |
Sbjct 684877 CTGGATGAGAACAGAGTTCATGTGGTGGTCCAGCTTCCCCTCAGCATTGACACAGCGCTG 684936
Query 27116 GTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172
|| ||| |||| ||| ||||| ||||| || || |||||||| | || ||||||||
Sbjct 684937 GTGGCGGCACTGTGCCTCCCAGATCACGGAAGGGTATCTATCAGGGTCCTCATTGCG 684993
>seq4352
Length=11160
Score = 113 bits (124), Expect = 3e-20
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115
|||||| |||||||| | ||||| ||||| ||||| ||||||| |||||| ||||||||
Sbjct 5083 AAGTTTATATTTCTCCAAATCAATGTCTGGGAAAAATGTGTCACTTTCAAATTCTTGCAT 5024
Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175
|||||| |||||||| ||| | |||| || ||| | | |||| ||||| || | ||| |
Sbjct 5023 GATCCTTGTCACAAAGAGTCTGAGATGGCCTGGCTTATTCATGGCTTCCTTTAAAACAAA 4964
Query 4176 AC 4177
||
Sbjct 4963 AC 4962
>seq6307
Length=6747
Score = 107 bits (118), Expect = 1e-18
Identities = 89/109 (82%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| || || |||||||||| | |||||||||| | |||||||| || |||||||||||
Sbjct 2084 CTTGAGCTCTCTGCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 2143
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||| |||||||| || || ||||||||||| | |||||||||| ||
Sbjct 2144 AATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGATTCTGTTTACCT 2192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361115062598171
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |