Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1345 269 3e-67 seq498 248 1e-60 seq657 131 2e-25 seq184 102 1e-16 seq78 91.5 2e-13 >seq1345 Length=786133 Score = 269 bits (298), Expect = 3e-67 Identities = 583/871 (67%), Gaps = 31/871 (4%) Strand=Plus/Minus Query 23846 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 23905 |||||| || ||||| | || || || || || || || | ||||| ||| |||||||| Sbjct 221205 TTGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTC 221146 Query 23906 CATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAA 23965 |||||| || ||| ||| || || | || | ||||| |||| || |||| Sbjct 221145 CATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCATCAG 221086 Query 23966 TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 24025 || || | ||||| || || || ||||||| | | ||||| || ||||| || Sbjct 221085 CCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCTT 221026 Query 24026 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 24085 || || | ||| | || || || || || || || | || | | || || Sbjct 221025 CACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTATTTT 220966 Query 24086 TCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 24144 |||||| | | || | | | | | | | | || || ||||||| || || || | Sbjct 220965 ACTTACTCTCTGCTCCTATGGCTTG-TGTACCAGGTGCTTGAACATCAGGCAGGCAAAGT 220907 Query 24145 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 24204 | || |||| ||||| ||||| || || | || |||||||| || || |||||||| | Sbjct 220906 CACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATAA 220847 Query 24205 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 24264 | || ||||| || ||||| ||||| || ||||| || ||||||||||| || ||||| | Sbjct 220846 GTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCA 220787 Query 24265 CTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAG 24324 | || |||||||| | || | |||||||| ||||| || | |||| Sbjct 220786 CGGCGGCAAAGGCCACAACACATTCTCCAT-------------ATGTAGCC-CCTTTGTC 220741 Query 24325 CCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttt 24384 |||| | || || |||||||| | || |||||||| |||||||| | Sbjct 220740 CCCAGT--GC---------AACGCAAGGCATCTTTTCAATAGCATTGAAGAGATACTCCC 220692 Query 24385 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 24444 | || || ||||||| |||| ||||| | ||||| |||||||| ||||| || | Sbjct 220691 TCTCCTTGGAATCTTTA----ATGTGTCAATAAGGAGACTGTACATTTCAGAATGTATAT 220636 Query 24445 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATAC 24504 |||| ||| | ||||| || || |||||||| | |||| || | || |||||| | Sbjct 220635 TTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTCTTGGC 220576 Query 24505 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 24564 ||| ||| | || || ||||| ||||| | |||||| |||||||| || ||| | Sbjct 220575 TGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGCCCGAA 220516 Query 24565 CATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAG 24624 |||| ||||| || | | || ||| | || | ||| | | ||||| || | Sbjct 220515 CATGAGGTATAACATGTCTCTCACTGGGTTTCAGAGCTTCCCAGTACTGAATATCCTTGG 220456 Query 24625 ATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGA 24684 | | ||||| || || | |||||||| || ||||| | || || ||||| | ||||| Sbjct 220455 AAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACATCTGCCAGA 220396 Query 24685 TGTCATGATATTGAATTGGAAAAATAACAAA 24715 | ||||| |||| || ||||| || ||||| Sbjct 220395 TATCATGGTATTTGATGGGAAAGATGACAAA 220365 >seq498 Length=2542268 Score = 248 bits (274), Expect = 1e-60 Identities = 618/935 (66%), Gaps = 59/935 (6%) Strand=Plus/Plus Query 23783 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTC 23838 |||| ||| || ||| |||| || | ||||| ||| ||| |||| ||||| || | Sbjct 2186306 GTTTACTTAGAAATCAGCATCCAAGGTAAAATAATTCTCTG-TTGAACTCGACATCAC-C 2186363 Query 23839 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATA 23898 |||| | ||||| || || | || || || || || | || || ||||||| ||| | Sbjct 2186364 CCATCCTCTGGTACTCGCCT-CTCGCTTCTCAAAGAAGCTGGTCTTTCCTTCTAGTGAAA 2186422 Query 23899 TATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAG 23958 ||||||||||||| | ||||||| | || |||| ||| Sbjct 2186423 TATTTTCCATGAAGTGAAATGGATTC-------TCTA----CTTTGAAA----------- 2186460 Query 23959 AAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTA 24018 |||| || ||||| |||||||| || || ||||||| || ||||| || | Sbjct 2186461 --ATCAGCCTGTCTGCCACAAACTCGATGTACTGCTTCATCAGAGTGCAGTTCATCCCGA 2186518 Query 24019 TAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 24078 | || || || || | ||| | ||||| || | || || || || |||| | Sbjct 2186519 TGAGCTTCACAGGCAAGGCCTCCGTAAGGAACTTCTGCTCTATCCTCACTGCGTTGACAA 2186578 Query 24079 TAATAGATCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACAT 24137 | || | |||| | | || | | | | | | | | || || ||||||| || Sbjct 2186579 TTATTTCTTTTACCCTCTGCTCCGATGGCTTG-TGTACCAGGTGCTTGAACATCAGGCAG 2186637 Query 24138 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 24197 || || || ||||||| ||||||||||| || || | || |||||||| || || ||| Sbjct 2186638 GCAAAGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCG 2186697 Query 24198 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 24257 ||||| || || |||| || ||||| ||||| || | || || || ||||| || Sbjct 2186698 GGCATCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAAGAACCG---AAGAAGATG 2186754 Query 24258 CCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATC 24314 ||||| || || |||||||| | || | ||||| || | | | |||| ||| Sbjct 2186755 CCTTCCACGGCGGCAAAGGCGACAACACGTTCTCTGTATGTAGCCTCTTTGTCCCAAATC 2186814 Query 24315 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 24374 || ||||| ||||||||||| || ||| ||||||| || ||||||||| | ||| Sbjct 2186815 CAACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATCGTTTCTATAGCAATGAAG 2186874 Query 24375 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 24434 ||||| | | || ||| |||||||| || || ||||| | ||||| |||||||| Sbjct 2186875 AGATACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATAAGGAGACTGTACATTTCA 2186934 Query 24435 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 24494 ||||| |||||||| ||||| ||||| || || |||||||| | ||||| || | || Sbjct 2186935 GAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGA 2186994 Query 24495 ACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 24554 |||||| | |||||| | | || || ||||| ||||| | |||||| ||||| || Sbjct 2186995 ACTTCTTGGCTAAATCGCT---CCAAGTTCTCATTGACTATGCTGTCACTCGCTGCGAAG 2187051 Query 24555 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 24614 || || || || |||||||| | | || | ||| | || ||| | | | Sbjct 2187052 AAAGCACGAACGTGAGGTATAAAATGTCTCTCCT-GGGTTTCAGAGCTCCCCAGTGCTGG 2187110 Query 24615 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 24674 |||||||| || | || ||||| || ||||| || || || ||| Sbjct 2187111 ATATCTTTGGA----------------AAGGTTCAAAAGGAGGCCTCCGCTTTCTTGTAC 2187154 Query 24675 ATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 || | |||||| ||||| |||| || ||||| || Sbjct 2187155 ATGTGCCAGATATCATGGTATTTGATGGGAAACAT 2187189 >seq657 Length=1571634 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| || || |||||||| || ||||||||||| ||||| | Sbjct 954656 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 954597 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 954596 GACTCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAA 954537 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 954536 CTGTTTCTTACACCATA 954520 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 957729 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 957670 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 957669 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCTGCCATCTTGAGAACAGTCT 957610 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | || ||||| | | |||| | || || |||| Sbjct 957609 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 957559 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 935527 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 935468 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || ||||| | ||||| | || || ||| | || || | |||||| |||| Sbjct 935467 TGGCATAGTCAGGATGCTTCGTAGTCAAGGTTGCCGCTGTCTCTGCAGCCAGAGTATCCA 935408 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 935407 GTTCCACTGTGGTGACCCCACTGTACAGGCCTTGGATTACTTTCAT 935362 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || Sbjct 947915 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 947856 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || || ||||||||||| || | || |||||| | | || || | ||||| Sbjct 947855 CTGCTCTTCCTTCCCTGTATTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 947796 Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGGCCG 54177 || |||| ||| || | | ||||||| || Sbjct 947795 AGGCTCCAGGTAAATAGCAAATGCTCCAGGGCG 947763 >seq184 Length=3314118 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || || || || | || || ||||| |||||||||||||| ||||| | ||| | Sbjct 1994076 CCTCATCCCTGCTGATGAGCTCATTTGAAAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 1994135 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| | |||||||| ||||| |||||||| ||||| || || || |||| Sbjct 1994136 TCAGCCAGAATATAGCAGCAAATGACCCAGAGAAGAAAATGCCTTCCACGGCGGCGAAGG 1994195 Query 24277 C 24277 | Sbjct 1994196 C 1994196 >seq78 Length=6419775 Score = 91.5 bits (100), Expect = 2e-13 Identities = 108/145 (74%), Gaps = 5/145 (3%) Strand=Plus/Plus Query 23783 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTC 23838 |||| ||| || ||| |||| || | |||| ||| ||| |||| ||||| || | Sbjct 5583561 GTTTACTTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCC 5583619 Query 23839 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATA 23898 |||| | |||||||| ||||| || || || || || || || || ||||||| ||| | Sbjct 5583620 CCATCCTCTGGTATTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 5583679 Query 23899 TATTTTCCATGAAATCGGATGGATT 23923 ||||||||||||| || ||||||| Sbjct 5583680 TATTTTCCATGAAGTCAAATGGATT 5583704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593492119180080