Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq481 248 1e-60
seq874 127 2e-24
>seq481
Length=1457593
Score = 248 bits (274), Expect = 1e-60
Identities = 590/883 (67%), Gaps = 13/883 (1%)
Strand=Plus/Minus
Query 176373 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 176432
|| ||||| || |||| | ||||||| || | || ||| | || |||||| |||
Sbjct 175560 CTGGTGTTCATCATTGGCCTCCTGGGCAACATGGTGGTTGTGTTGATCCTCATAAAGTAC 175501
Query 176433 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 176492
| |||| || ||| | ||||| || | ||| | ||||||||| | |||||| ||||
Sbjct 175500 AGGAAGCTCCAAATTATGACTAATATTTACCTGCTCAACTTGGCAGTTTCTGACCTGCTC 175441
Query 176493 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 176552
| ||| || || | ||||| ||||| |||||| || ||| |||| ||| ||||
Sbjct 175440 TCTCTCTTCACCATTCCATTCTGGATTCACTATGTTT---TGTGGAATGAGTGGCGTTTT 175384
Query 176553 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 176612
|| | | |||||||||| || || | | |||| | | |||||||| || |
Sbjct 175383 GGCCATCACATGTGTAAACTAATCTCTGGGTTTTATTACCTTGCCTTGTACAGCGAGATA 175324
Query 176613 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCT 176672
|||| |||||||||||| || | |||||||| || || ||||| ||||||| |||
Sbjct 175323 TTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCCATTGTCCATGCTGTGTTTGCC 175264
Query 176673 TTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCA 176732
| || | || || || | || | | ||| | | |||||| ||||||
Sbjct 175263 CTTAGAGCCCGGACCGTGACTTTTGCTACCATCACCAGCATCATCACCTGGGGACTGGCA 175204
Query 176733 GGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGG-- 176790
||| || | | ||||||||| |||| |||| |||||| | ||| || |
Sbjct 175203 GGGCTGGCAGCATTACCTGAATTTATCTTCCATGAGTCCCAAGACAGCTTTGG-AGAGCC 175145
Query 176791 -TTCAGTGTGATCCTTACTACCCAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGT 176848
||| |||| ||| |||||||| | || | || | |||| ||| ||| |
Sbjct 175144 TTTC--TGTGGACCTCGTTACCCAGA-AGGTGAAGAAGACAGCTGGAAGCGTTTCCATGC 175088
Query 176849 TGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTA 176908
| | ||| ||| || || | | | ||||| |||||||||| | ||||||| |
Sbjct 175087 TCTGAGAATGAATATTTTTGGTTTAGCTCTCCCTCTCCTCATTATGGTTATCTGCTATTC 175028
Query 176909 TGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCT 176968
| ||| || | || ||| |||| |||||| || || ||| ||||||||||| ||||
Sbjct 175027 AGGAATCATTAAAACTCTGCTGAGATGCCCCAATAAAAAAAAGGACAAGGCCATCCGGCT 174968
Query 176969 CATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCT 177028
|| ||||| | ||| | | || |||| |||||||||| || |||||| | ||||||||
Sbjct 174967 TATTTTTGTTGTTATGATAGTCTTTTTTATTTTTTGGACCCCATACAACCTGGTTCTCCT 174908
Query 177029 ACTGTCTACCTTTCACGCAACCCTTCTTAACCTGCAG-TGTGCATTGAGCAGTAACTTGG 177087
|| ||| | |||||| | | || || ||| ||| | ||||| || |||
Sbjct 174907 TCTCTCTGCTTTTCACAGTA-CATTTTTGGAGAACAGCTGTCAACAGAGCAAACACCTGG 174849
Query 177088 ACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGA 177147
|| |||| ||| | || | | |||||||| || || || ||||||||||| |
Sbjct 174848 ACCTGGCCATGCAAGTGACTGAGGTGATCGCCTACACCCATTGCTGTATCAACCCAGTCA 174789
Query 177148 TCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACG 177207
|||| || || || || |||| ||| | | |||||| | ||| || |||| | |
Sbjct 174788 TCTATGCCTTTGTTGGTGAGAGGTTCCGGAAACACCTTCGGCTCTTTTTTCACAGACATG 174729
Query 177208 TGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 177250
|||| |||||||| | || ||||| || ||||| |||||||
Sbjct 174728 TGGCAATCTACCTGGGGAAATACATTCCATTCCTTCCTGGTGA 174686
Score = 248 bits (274), Expect = 1e-60
Identities = 590/883 (67%), Gaps = 13/883 (1%)
Strand=Plus/Minus
Query 9487 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 9546
|| ||||| || |||| | ||||||| || | || ||| | || |||||| |||
Sbjct 175560 CTGGTGTTCATCATTGGCCTCCTGGGCAACATGGTGGTTGTGTTGATCCTCATAAAGTAC 175501
Query 9547 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 9606
| |||| || ||| | ||||| || | ||| | ||||||||| | |||||| ||||
Sbjct 175500 AGGAAGCTCCAAATTATGACTAATATTTACCTGCTCAACTTGGCAGTTTCTGACCTGCTC 175441
Query 9607 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 9666
| ||| || || | ||||| ||||| |||||| || ||| |||| ||| ||||
Sbjct 175440 TCTCTCTTCACCATTCCATTCTGGATTCACTATGTTT---TGTGGAATGAGTGGCGTTTT 175384
Query 9667 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 9726
|| | | |||||||||| || || | | |||| | | |||||||| || |
Sbjct 175383 GGCCATCACATGTGTAAACTAATCTCTGGGTTTTATTACCTTGCCTTGTACAGCGAGATA 175324
Query 9727 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCT 9786
|||| |||||||||||| || | |||||||| || || ||||| ||||||| |||
Sbjct 175323 TTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCCATTGTCCATGCTGTGTTTGCC 175264
Query 9787 TTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCA 9846
| || | || || || | || | | ||| | | |||||| ||||||
Sbjct 175263 CTTAGAGCCCGGACCGTGACTTTTGCTACCATCACCAGCATCATCACCTGGGGACTGGCA 175204
Query 9847 GGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGG-- 9904
||| || | | ||||||||| |||| |||| |||||| | ||| || |
Sbjct 175203 GGGCTGGCAGCATTACCTGAATTTATCTTCCATGAGTCCCAAGACAGCTTTGG-AGAGCC 175145
Query 9905 -TTCAGTGTGATCCTTACTACCCAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGT 9962
||| |||| ||| |||||||| | || | || | |||| ||| ||| |
Sbjct 175144 TTTC--TGTGGACCTCGTTACCCAGA-AGGTGAAGAAGACAGCTGGAAGCGTTTCCATGC 175088
Query 9963 TGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTA 10022
| | ||| ||| || || | | | ||||| |||||||||| | ||||||| |
Sbjct 175087 TCTGAGAATGAATATTTTTGGTTTAGCTCTCCCTCTCCTCATTATGGTTATCTGCTATTC 175028
Query 10023 TGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCT 10082
| ||| || | || ||| |||| |||||| || || ||| ||||||||||| ||||
Sbjct 175027 AGGAATCATTAAAACTCTGCTGAGATGCCCCAATAAAAAAAAGGACAAGGCCATCCGGCT 174968
Query 10083 CATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCT 10142
|| ||||| | ||| | | || |||| |||||||||| || |||||| | ||||||||
Sbjct 174967 TATTTTTGTTGTTATGATAGTCTTTTTTATTTTTTGGACCCCATACAACCTGGTTCTCCT 174908
Query 10143 ACTGTCTACCTTTCACGCAACCCTTCTTAACCTGCAG-TGTGCATTGAGCAGTAACTTGG 10201
|| ||| | |||||| | | || || ||| ||| | ||||| || |||
Sbjct 174907 TCTCTCTGCTTTTCACAGTA-CATTTTTGGAGAACAGCTGTCAACAGAGCAAACACCTGG 174849
Query 10202 ACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGA 10261
|| |||| ||| | || | | |||||||| || || || ||||||||||| |
Sbjct 174848 ACCTGGCCATGCAAGTGACTGAGGTGATCGCCTACACCCATTGCTGTATCAACCCAGTCA 174789
Query 10262 TCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACG 10321
|||| || || || || |||| ||| | | |||||| | ||| || |||| | |
Sbjct 174788 TCTATGCCTTTGTTGGTGAGAGGTTCCGGAAACACCTTCGGCTCTTTTTTCACAGACATG 174729
Query 10322 TGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 10364
|||| |||||||| | || ||||| || ||||| |||||||
Sbjct 174728 TGGCAATCTACCTGGGGAAATACATTCCATTCCTTCCTGGTGA 174686
Score = 105 bits (116), Expect = 8e-18
Identities = 171/242 (71%), Gaps = 12/242 (5%)
Strand=Plus/Minus
Query 176943 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 177002
||||||| | ||| ||| | ||||| ||||||| ||||||| | | ||| ||| | ||
Sbjct 96992 AAGAAGAGGCACAGGGCTGTGAGGCTTATCTTTGCCATCATGATTGTCTACTTTATCTTC 96933
Query 177003 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTA-ACCT 177061
||||| |||||||||||||||||| | ||| ||||| || | | |||||| ||
Sbjct 96932 TGGACTCCCTACAACATTGTTCTCTTCCTGAACACCTTCCAGGAA----TTCTTAGGACT 96877
Query 177062 G-----CAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTA 177116
| | ||||| ||| || | |||| ||| ||| ||| | | ||| | || |
Sbjct 96876 GAGTAACTGTGTG-GTTG-CCAATCACTTAGACCAGGCCATGCAGGTGACAGAGACTCTT 96819
Query 177117 GCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGA 177176
| |||||||| ||||||||||| || || || || || || ||||||||||| ||
Sbjct 96818 GGAATGACACACTGCTGCATCAACCCTGTCATTTATGCCTTTGTTGGGGAGAAGTTCCGA 96759
Query 177177 AG 177178
||
Sbjct 96758 AG 96757
Score = 105 bits (116), Expect = 8e-18
Identities = 171/242 (71%), Gaps = 12/242 (5%)
Strand=Plus/Minus
Query 10057 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 10116
||||||| | ||| ||| | ||||| ||||||| ||||||| | | ||| ||| | ||
Sbjct 96992 AAGAAGAGGCACAGGGCTGTGAGGCTTATCTTTGCCATCATGATTGTCTACTTTATCTTC 96933
Query 10117 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTA-ACCT 10175
||||| |||||||||||||||||| | ||| ||||| || | | |||||| ||
Sbjct 96932 TGGACTCCCTACAACATTGTTCTCTTCCTGAACACCTTCCAGGAA----TTCTTAGGACT 96877
Query 10176 G-----CAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTA 10230
| | ||||| ||| || | |||| ||| ||| ||| | | ||| | || |
Sbjct 96876 GAGTAACTGTGTG-GTTG-CCAATCACTTAGACCAGGCCATGCAGGTGACAGAGACTCTT 96819
Query 10231 GCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGA 10290
| |||||||| ||||||||||| || || || || || || ||||||||||| ||
Sbjct 96818 GGAATGACACACTGCTGCATCAACCCTGTCATTTATGCCTTTGTTGGGGAGAAGTTCCGA 96759
Query 10291 AG 10292
||
Sbjct 96758 AG 96757
Score = 87.8 bits (96), Expect = 2e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 176943 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 177002
||||||| | ||||||| | ||||||||||||| ||||||| | | ||| ||| | ||
Sbjct 84312 AAGAAGAGGCACAAGGCTGTGAGGCTCATCTTTGCCATCATGATTGTCTACTTTATCTTC 84253
Query 177003 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCA 177043
||||| |||||||||||||| || || ||| ||||| ||
Sbjct 84252 TGGACTCCCTACAACATTGTCCTTCTCCTGATCACCTTCCA 84212
Score = 87.8 bits (96), Expect = 2e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 10057 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 10116
||||||| | ||||||| | ||||||||||||| ||||||| | | ||| ||| | ||
Sbjct 84312 AAGAAGAGGCACAAGGCTGTGAGGCTCATCTTTGCCATCATGATTGTCTACTTTATCTTC 84253
Query 10117 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCA 10157
||||| |||||||||||||| || || ||| ||||| ||
Sbjct 84252 TGGACTCCCTACAACATTGTCCTTCTCCTGATCACCTTCCA 84212
Score = 82.4 bits (90), Expect = 9e-11
Identities = 226/346 (65%), Gaps = 3/346 (1%)
Strand=Plus/Plus
Query 9470 TACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGA 9529
|||| ||||||| || ||||| || |||| || | |||||| | | |||||
Sbjct 242234 TACCACCCCTGTACTCCCTGGTGTTCATCATTGGAGTGATAGGCAATGTTCTGGTGGTTC 242293
Query 9530 TTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGG 9589
| | |||| |||| || | | || | | || | ||| | ||||| ||| |||
Sbjct 242294 TGGTGCTCATGCAGTACAGGAGGCTTCGAAGCATGACCAGCATCTACCTGTTCAACCTGG 242353
Query 9590 CAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGT 9649
| || ||||| || | |||||||| |||||||| || ||||| |||| | ||
Sbjct 242354 CCATCTCTGATCTGGTCTTTCTTTTCACTTTGCCTTTCTGGATTGACTACAAGC---TGA 242410
Query 9650 ATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGT 9709
| | | ||| ||||||| | || ||||||| || ||| || | | |||| ||
Sbjct 242411 AAGACAACTGGGTTTTTGGTGATGCCATGTGTAAGCTCCTCTCTGGGTTTTATTACCTGG 242470
Query 9710 CACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTG 9769
| ||||| || | || | ||||||||||| || | |||||||| || ||| |||
Sbjct 242471 GCTTATACAGTGAGATATTCTTTATCATCCTGCTGACGATTGACAGGTACCTGGCTATTG 242530
Query 9770 TCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCAT 9815
| |||| || ||| ||||| | || || || | ||||||
Sbjct 242531 TTCATGCAGTGTTTGCCCTGAGGGCCCGGACTGTCACTTTTGGCAT 242576
Score = 82.4 bits (90), Expect = 9e-11
Identities = 226/346 (65%), Gaps = 3/346 (1%)
Strand=Plus/Plus
Query 176356 TACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGA 176415
|||| ||||||| || ||||| || |||| || | |||||| | | |||||
Sbjct 242234 TACCACCCCTGTACTCCCTGGTGTTCATCATTGGAGTGATAGGCAATGTTCTGGTGGTTC 242293
Query 176416 TTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGG 176475
| | |||| |||| || | | || | | || | ||| | ||||| ||| |||
Sbjct 242294 TGGTGCTCATGCAGTACAGGAGGCTTCGAAGCATGACCAGCATCTACCTGTTCAACCTGG 242353
Query 176476 CAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGT 176535
| || ||||| || | |||||||| |||||||| || ||||| |||| | ||
Sbjct 242354 CCATCTCTGATCTGGTCTTTCTTTTCACTTTGCCTTTCTGGATTGACTACAAGC---TGA 242410
Query 176536 ATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGT 176595
| | | ||| ||||||| | || ||||||| || ||| || | | |||| ||
Sbjct 242411 AAGACAACTGGGTTTTTGGTGATGCCATGTGTAAGCTCCTCTCTGGGTTTTATTACCTGG 242470
Query 176596 CACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTG 176655
| ||||| || | || | ||||||||||| || | |||||||| || ||| |||
Sbjct 242471 GCTTATACAGTGAGATATTCTTTATCATCCTGCTGACGATTGACAGGTACCTGGCTATTG 242530
Query 176656 TCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCAT 176701
| |||| || ||| ||||| | || || || | ||||||
Sbjct 242531 TTCATGCAGTGTTTGCCCTGAGGGCCCGGACTGTCACTTTTGGCAT 242576
>seq874
Length=605229
Score = 127 bits (140), Expect = 2e-24
Identities = 124/159 (78%), Gaps = 7/159 (4%)
Strand=Plus/Plus
Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141
|||||| ||||| | ||||||||| || ||||| || |||||| | |||| | |||
Sbjct 546850 CAGCGCTGCAGCCGCCTCCTGAGGGTCTTCAGCTTCTCTCCCAGGAAATTCAAATGCTCC 546909
Query 138142 TT--TTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACT 138199
|| || |||| || |||||||| |||||||||||||| || ||||||||||||
Sbjct 546910 TTGATTTCTGG-----GCCATGGTTCTCTGCCTGGGGCATCACTTCTACCAGGTAAAACT 546964
Query 138200 GGATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238
||||||| || || | ||| ||||| |||||||||||||
Sbjct 546965 GGATCATTTCTGATAAGGCTTGGCAACCCAGGTAACCCT 547003
Score = 113 bits (124), Expect = 5e-20
Identities = 82/95 (86%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981
|||||||||||| | |||||||||| || |||||| |||| |||||||||||||||||
Sbjct 544626 TCAGTTTTTCATTCTGATGGTCATGTACGCTTCTATGCAGTTGATGAAGATGTCAAACTC 544685
Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016
||||||||||||||||| || || || |||||||
Sbjct 544686 ACTCATGGCCTTGTAGACGCCGTTCTCTTGGAGCT 544720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589848727940840
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