Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq38 266 4e-66
seq101 219 5e-52
seq183 105 8e-18
seq28 86.0 8e-12
>seq38
Length=12148825
Score = 266 bits (294), Expect = 4e-66
Identities = 333/454 (73%), Gaps = 2/454 (0%)
Strand=Plus/Minus
Query 83033 TAGTAGCCGC-GCGCTGGCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGT 83091
||| ||| || | |||| | ||| |||||||| || ||||| || | | | | | |||
Sbjct 5362072 TAGGAGCTGCTGGGCTG-CTGGGCCAGCAGGGCTTCTATGTCAGGTTAGATGTCGATGGT 5362014
Query 83092 CTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTC 83151
||||| ||||||| |||||||| || ||||| ||||||| |||||||||
Sbjct 5362013 GCAAAAGCGGCGGCTGTATCTGCGCACTGGAACACCGTCGCGGCCCACCAGGAACTTCTC 5361954
Query 83152 GAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCT 83211
|||||||||||| | ||||||||||||||| |||||||| ||| || ||||||| |
Sbjct 5361953 GAAGTTCCAGGCAATGTCGTTGCGGCACACCGGAGACCAAATGATGGACTTGGGGTCGGT 5361894
Query 83212 CACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAG 83271
|| ||||| | ||||| || || ||||||| || ||| || ||||| | |||||
Sbjct 5361893 CATGAGCGCAGTGGGCTCGTCACTGGGTGCCGGCAAGGACTCCCGCAGGAAAGTAAAGAG 5361834
Query 83272 CGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAA 83331
||| || ||| | |||| || ||||| ||||||||||| | ||||||| || |||||
Sbjct 5361833 CGGGTGGGCCTTCTCACCATTCACCTCACACTTCTCGAACAATGTAAAGTTGGGTTCGAA 5361774
Query 83332 GCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTC 83391
|| || || |||| | ||| |||||| || ||||| | || | ||| || ||
Sbjct 5361773 CCCCCCACCGGGTCGGATATACTTGAGGGAATCCAGAATCTCTTCGTTTTTGGCATTCTC 5361714
Query 83392 CTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCG 83451
||| || |||||||| || |||||||| || ||||| | ||| || |||| || | |||
Sbjct 5361713 CTGATGTCCGAACTGATTGCACGGGAAACCGAGCACCATCAGGCCACGAGGCCCGAAGCG 5361654
Query 83452 CCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGG 83485
|||||| |||||||||| ||||| ||||||
Sbjct 5361653 TTTCTGCAGATCGTTCATCTCGGTGTAGTCCCGG 5361620
>seq101
Length=3066595
Score = 219 bits (242), Expect = 5e-52
Identities = 270/365 (74%), Gaps = 8/365 (2%)
Strand=Plus/Plus
Query 83033 TAGTAGCCGC-GCGCTGGCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGT 83091
||| ||| || | |||| | ||| |||||||| || ||||| || || | | | | |||
Sbjct 845870 TAGGAGCTGCTGGGCTG-CTGGGCCAGCAGGGCTTCTATGTCAGGTTCGATGTCGATGGT 845928
Query 83092 CTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTC 83151
| ||||| |||||||||||||||| || ||||| ||||||| |||||||||
Sbjct 845929 GCGAAAGCGGCGGCTGTACCTGCGCACTGGAACACCGTCGCGGCCCACCAGGAACTTCTC 845988
Query 83152 GAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCT 83211
|||||||||||| | ||||||||||||||| ||||||||| ||| || ||||||| |
Sbjct 845989 GAAGTTCCAGGCAATGTCGTTGCGGCACACCGGAGACCAGATGATGGACTTGGGGTCGGT 846048
Query 83212 CACGAGC---GTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAA 83268
|| |||| ||| | ||||| || || || |||| || ||| || ||||| | ||
Sbjct 846049 CATGAGCACAGTGGGC---TCGTCACTGGGTGCTGGCAAGGACTCCCGCAGGAAAGTAAA 846105
Query 83269 GAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTC 83328
|||||| || ||| | ||||||| ||||||||||||||||| | ||||||| || ||
Sbjct 846106 GAGCGGGTGGGCCTTCTCACCGTTCACCTCGCACTTCTCGAACAATGTAAAGTTGGGTTC 846165
Query 83329 GAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTT 83388
||| || || || ||||| | ||| |||||| || ||||| | |||| | | ||
Sbjct 846166 GAACCCCCCACCGGGTCGGACATACTTGAGGGAATCCAGAATCTCTTCGTTCTTGCCATT 846225
Query 83389 TTCCT 83393
||||
Sbjct 846226 CTCCT 846230
Score = 159 bits (176), Expect = 4e-34
Identities = 160/208 (77%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || |||||||| || |||||||| || ||||| | ||| || |||| || ||||
Sbjct 846448 CCTGATGTCCGAACTGATTGCACGGGAAACCGAGCACCATCAGGCCACGAGGCCCGAGGC 846507
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
| |||||| |||||||||| ||||| |||||| ||| | |||||||||||||| |
Sbjct 846508 GTTTCTGCAGATCGTTCATCTCGGTGTAGTCCCGGGTCGTTGTGCCTCAGAGGGACGCGA 846567
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
| ||||||||||||| ||| ||||| | | |||| | ||||||||| || || || |
Sbjct 846568 CATTCTCGATGAGCAGCACCTTGCCCCTCAGGGAGCCCAGGCTCACAGGCTCCCCGCCCG 846627
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598
| |||||| || || ||||| |||||
Sbjct 846628 CCAGCGGGCGCGCGGAAAAGGCATACAC 846655
>seq183
Length=4430156
Score = 105 bits (116), Expect = 8e-18
Identities = 185/264 (70%), Gaps = 4/264 (2%)
Strand=Plus/Minus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||| | || |||| | ||| || ||| ||| ||||||||| || |||
Sbjct 742680 GCAGCTGCGGAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCCCGCCTGC 742622
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || | || || |||||||| || |||||||||| || ||| | |||||||
Sbjct 742621 TGGTGCACCTCTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 742562
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
||| || |||||||| |||| || ||||| ||| | | | |||| |||||
Sbjct 742561 GCGGTTCGCTGGGCAAGAAGCAG-CTGGACCCCGCCCGCATCAGGCTCATCCGCCACTAC 742503
Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647
|||||| |||| ||||| ||| ||||| |||||||||| ||||| |||
Sbjct 742502 GTGCAGCTGCTCTACCCGCGGGCCAAGAACGACCGCGTGTGGACTCTGGAGTTCGTGGGC 742443
Query 50648 TGCCTGGACGAGCGCTGCCGGCGC 50671
|||||||||||||| ||||||
Sbjct 742442 AAGCTGGACGAGCGCTGTCGGCGC 742419
>seq28
Length=9942386
Score = 86.0 bits (94), Expect = 8e-12
Identities = 218/329 (66%), Gaps = 2/329 (1%)
Strand=Plus/Minus
Query 83068 GATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCC 83127
|||||| ||||| | | | ||| ||| || | ||||||| | ||| | ||| ||
Sbjct 7369907 GATGTCAGGCTCAATGTGGATGGTTTGGAAGGTGCGGCTGTAGCGGCGGAACGGCTCTCC 7369848
Query 83128 GTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGA 83187
|| | || | | ||||||||| |||||||||||||| || ||||| ||| |||
Sbjct 7369847 TTCTGGCCCTATGAGGAACTTCTCAAAGTTCCAGGCCACATCTGAGCGGCGCACCGGACT 7369788
Query 83188 CCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAG 83247
||| ||||||| ||| | | ||| ||| | | | |||||| ||| || ||
Sbjct 7369787 CCACATGATGAGCTTGGGATTGGTCATGAGGGAGAACGGGTCGTCATAAGGGTAGGGTAG 7369728
Query 83248 GGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCGTTGACCTCGCACTTCT 83306
||| ||| |||| |||| ||||| | | ||| |||||||| || |||||||
Sbjct 7369727 CTTGTCTTTCAGGTAGGCAAAGACGGGATGCTCATTCTGC-CCGTTGACGTCACACTTCT 7369669
Query 83307 CGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCA 83366
| || | ||| | |||| | | || |||||| ||||| | ||| ||| ||
Sbjct 7369668 GGGTAAGACTGAAGGTGGGCTGGTACCCACCCCCAGGGCGGACATACTTGAGGCTGTTCA 7369609
Query 83367 AGATCTCGGCATTCTGGGCGTTTTCCTGG 83395
|||||| | ||||| ||| ||||||
Sbjct 7369608 GGATCTCCTCGTTCTGACAGTTCTCCTGG 7369580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608561492426840
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