Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq38 266 4e-66 seq101 219 5e-52 seq183 105 8e-18 seq28 86.0 8e-12 >seq38 Length=12148825 Score = 266 bits (294), Expect = 4e-66 Identities = 333/454 (73%), Gaps = 2/454 (0%) Strand=Plus/Minus Query 83033 TAGTAGCCGC-GCGCTGGCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGT 83091 ||| ||| || | |||| | ||| |||||||| || ||||| || | | | | | ||| Sbjct 5362072 TAGGAGCTGCTGGGCTG-CTGGGCCAGCAGGGCTTCTATGTCAGGTTAGATGTCGATGGT 5362014 Query 83092 CTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTC 83151 ||||| ||||||| |||||||| || ||||| ||||||| ||||||||| Sbjct 5362013 GCAAAAGCGGCGGCTGTATCTGCGCACTGGAACACCGTCGCGGCCCACCAGGAACTTCTC 5361954 Query 83152 GAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCT 83211 |||||||||||| | ||||||||||||||| |||||||| ||| || ||||||| | Sbjct 5361953 GAAGTTCCAGGCAATGTCGTTGCGGCACACCGGAGACCAAATGATGGACTTGGGGTCGGT 5361894 Query 83212 CACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAG 83271 || ||||| | ||||| || || ||||||| || ||| || ||||| | ||||| Sbjct 5361893 CATGAGCGCAGTGGGCTCGTCACTGGGTGCCGGCAAGGACTCCCGCAGGAAAGTAAAGAG 5361834 Query 83272 CGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAA 83331 ||| || ||| | |||| || ||||| ||||||||||| | ||||||| || ||||| Sbjct 5361833 CGGGTGGGCCTTCTCACCATTCACCTCACACTTCTCGAACAATGTAAAGTTGGGTTCGAA 5361774 Query 83332 GCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTC 83391 || || || |||| | ||| |||||| || ||||| | || | ||| || || Sbjct 5361773 CCCCCCACCGGGTCGGATATACTTGAGGGAATCCAGAATCTCTTCGTTTTTGGCATTCTC 5361714 Query 83392 CTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCG 83451 ||| || |||||||| || |||||||| || ||||| | ||| || |||| || | ||| Sbjct 5361713 CTGATGTCCGAACTGATTGCACGGGAAACCGAGCACCATCAGGCCACGAGGCCCGAAGCG 5361654 Query 83452 CCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGG 83485 |||||| |||||||||| ||||| |||||| Sbjct 5361653 TTTCTGCAGATCGTTCATCTCGGTGTAGTCCCGG 5361620 >seq101 Length=3066595 Score = 219 bits (242), Expect = 5e-52 Identities = 270/365 (74%), Gaps = 8/365 (2%) Strand=Plus/Plus Query 83033 TAGTAGCCGC-GCGCTGGCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGT 83091 ||| ||| || | |||| | ||| |||||||| || ||||| || || | | | | ||| Sbjct 845870 TAGGAGCTGCTGGGCTG-CTGGGCCAGCAGGGCTTCTATGTCAGGTTCGATGTCGATGGT 845928 Query 83092 CTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTC 83151 | ||||| |||||||||||||||| || ||||| ||||||| ||||||||| Sbjct 845929 GCGAAAGCGGCGGCTGTACCTGCGCACTGGAACACCGTCGCGGCCCACCAGGAACTTCTC 845988 Query 83152 GAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCT 83211 |||||||||||| | ||||||||||||||| ||||||||| ||| || ||||||| | Sbjct 845989 GAAGTTCCAGGCAATGTCGTTGCGGCACACCGGAGACCAGATGATGGACTTGGGGTCGGT 846048 Query 83212 CACGAGC---GTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAA 83268 || |||| ||| | ||||| || || || |||| || ||| || ||||| | || Sbjct 846049 CATGAGCACAGTGGGC---TCGTCACTGGGTGCTGGCAAGGACTCCCGCAGGAAAGTAAA 846105 Query 83269 GAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTC 83328 |||||| || ||| | ||||||| ||||||||||||||||| | ||||||| || || Sbjct 846106 GAGCGGGTGGGCCTTCTCACCGTTCACCTCGCACTTCTCGAACAATGTAAAGTTGGGTTC 846165 Query 83329 GAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTT 83388 ||| || || || ||||| | ||| |||||| || ||||| | |||| | | || Sbjct 846166 GAACCCCCCACCGGGTCGGACATACTTGAGGGAATCCAGAATCTCTTCGTTCTTGCCATT 846225 Query 83389 TTCCT 83393 |||| Sbjct 846226 CTCCT 846230 Score = 159 bits (176), Expect = 4e-34 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || |||||||| || |||||||| || ||||| | ||| || |||| || |||| Sbjct 846448 CCTGATGTCCGAACTGATTGCACGGGAAACCGAGCACCATCAGGCCACGAGGCCCGAGGC 846507 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | |||||| |||||||||| ||||| |||||| ||| | |||||||||||||| | Sbjct 846508 GTTTCTGCAGATCGTTCATCTCGGTGTAGTCCCGGGTCGTTGTGCCTCAGAGGGACGCGA 846567 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| ||||| | | |||| | ||||||||| || || || | Sbjct 846568 CATTCTCGATGAGCAGCACCTTGCCCCTCAGGGAGCCCAGGCTCACAGGCTCCCCGCCCG 846627 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | |||||| || || ||||| ||||| Sbjct 846628 CCAGCGGGCGCGCGGAAAAGGCATACAC 846655 >seq183 Length=4430156 Score = 105 bits (116), Expect = 8e-18 Identities = 185/264 (70%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||| | || |||| | ||| || ||| ||| ||||||||| || ||| Sbjct 742680 GCAGCTGCGGAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCCCGCCTGC 742622 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 742621 TGGTGCACCTCTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 742562 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||| || |||||||| |||| || ||||| ||| | | | |||| ||||| Sbjct 742561 GCGGTTCGCTGGGCAAGAAGCAG-CTGGACCCCGCCCGCATCAGGCTCATCCGCCACTAC 742503 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| ||||| ||| ||||| |||||||||| ||||| ||| Sbjct 742502 GTGCAGCTGCTCTACCCGCGGGCCAAGAACGACCGCGTGTGGACTCTGGAGTTCGTGGGC 742443 Query 50648 TGCCTGGACGAGCGCTGCCGGCGC 50671 |||||||||||||| |||||| Sbjct 742442 AAGCTGGACGAGCGCTGTCGGCGC 742419 >seq28 Length=9942386 Score = 86.0 bits (94), Expect = 8e-12 Identities = 218/329 (66%), Gaps = 2/329 (1%) Strand=Plus/Minus Query 83068 GATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCC 83127 |||||| ||||| | | | ||| ||| || | ||||||| | ||| | ||| || Sbjct 7369907 GATGTCAGGCTCAATGTGGATGGTTTGGAAGGTGCGGCTGTAGCGGCGGAACGGCTCTCC 7369848 Query 83128 GTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGA 83187 || | || | | ||||||||| |||||||||||||| || ||||| ||| ||| Sbjct 7369847 TTCTGGCCCTATGAGGAACTTCTCAAAGTTCCAGGCCACATCTGAGCGGCGCACCGGACT 7369788 Query 83188 CCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAG 83247 ||| ||||||| ||| | | ||| ||| | | | |||||| ||| || || Sbjct 7369787 CCACATGATGAGCTTGGGATTGGTCATGAGGGAGAACGGGTCGTCATAAGGGTAGGGTAG 7369728 Query 83248 GGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCGTTGACCTCGCACTTCT 83306 ||| ||| |||| |||| ||||| | | ||| |||||||| || ||||||| Sbjct 7369727 CTTGTCTTTCAGGTAGGCAAAGACGGGATGCTCATTCTGC-CCGTTGACGTCACACTTCT 7369669 Query 83307 CGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCA 83366 | || | ||| | |||| | | || |||||| ||||| | ||| ||| || Sbjct 7369668 GGGTAAGACTGAAGGTGGGCTGGTACCCACCCCCAGGGCGGACATACTTGAGGCTGTTCA 7369609 Query 83367 AGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 |||||| | ||||| ||| |||||| Sbjct 7369608 GGATCTCCTCGTTCTGACAGTTCTCCTGG 7369580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608561492426840