Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq6 125 6e-24 seq70 107 2e-18 seq366 100 2e-16 seq31 98.7 8e-16 seq3 91.5 1e-13 seq120 89.7 4e-13 seq37 87.8 2e-12 seq4 86.0 5e-12 >seq6 Length=12818899 Score = 125 bits (138), Expect = 6e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| ||||||||| || || ||||| ||||| | |||||| || | || Sbjct 2580488 GAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 2580429 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| ||||| ||| | || || ||||||||||| ||| | || || ||||| Sbjct 2580428 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTC 2580369 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 ||||||| || || | ||| || |||| |||||| || | ||| ||||| Sbjct 2580368 CTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGT 2580309 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| || ||||| ||||| || || || |||||| Sbjct 2580308 CTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 2580275 >seq70 Length=7483708 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 20956 GCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTT 21015 |||| | ||||||| ||||| |||||||| || || ||||| || || | |||||| Sbjct 5585699 GCAGGCGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTTTAATCTGACAGGGTGA 5585758 Query 21016 GGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTT 21075 || ||||||||||||||||| ||| | || || |||||||||| || | | ||| Sbjct 5585759 GGCGATCCTCCAGCTGTTTGCCAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCTT 5585818 Query 21076 CCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGG 21135 ||||||| |||||| || || | | | || |||| ||||| || | | Sbjct 5585819 CCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGAG 5585878 Query 21136 TAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 | ||||||||||| || | || || ||||| || ||||| ||| Sbjct 5585879 TGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGTTG 5585922 >seq366 Length=4409749 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||||| ||| |||| || || ||||| ||||||| |||||| ||| | ||| Sbjct 1116222 AGCACCAGGTGCAAGGTGAACTCTTTCTGGATGTTGTAGTCCGACAGGGTGTGGCCATCC 1116281 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || || ||||||||||| || | ||||||||| || Sbjct 1116282 TCCAGCTGCTTTCCGGCAAATATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTATCT 1116341 Query 21084 GCGATCTT 21091 |||||| Sbjct 1116342 TGGATCTT 1116349 >seq31 Length=11202321 Score = 98.7 bits (108), Expect = 8e-16 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| ||| | || |||| ||||||||| ||| Sbjct 8040974 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 8041033 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || || || |||||| || || | ||| || |||| ||||||| | Sbjct 8041034 ATGCCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACT 8041093 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||| ||| |||||||||||||| | || || || || || |||||||||| Sbjct 8041094 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGA 8041145 >seq3 Length=5748141 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/225 (69%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 20956 GCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTT 21015 |||| | ||||||| |||| |||||||| || || ||||| ||||| | |||||| Sbjct 3927303 GCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGC 3927362 Query 21016 GGGCGTCCTCCAGCTGTTTGCCCGCATAA-ATAAGTCTCTGCTGGTCCACGGGCACGCCT 21074 || | || ||||||| |||| ||| | || || ||||||||||| || | |||| Sbjct 3927363 GGCCATCACCCAGCTGCTTGCTGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCT 3927422 Query 21075 TCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACG 21134 ||||| || |||||| || || | ||| || |||| ||||| || | Sbjct 3927423 TCCTTATCTTGGATCTTGACCTTGACATTCTCGATGGTGTCACTAGGCTCGACCTCTAGA 3927482 Query 21135 GTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || ||| ||||||| || | || || ||||| || ||||| ||| Sbjct 3927483 GTGATGTTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATGTTG 3927527 >seq120 Length=4857412 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 20965 GCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCT 21024 |||||| |||||| ||||||| || || ||||| ||||||| ||| || | | |||| Sbjct 3874452 GCACCAGATGCAAGATGGACTCTTTCTGGATGTTGTAGTCCGACAGAGTGCCGCCATCCT 3874393 Query 21025 CCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGG 21084 ||||||| ||||| ||| | | || ||||||||||| | | |||||||||||| Sbjct 3874392 CCAGCTGCTTGCCAGCAAATGTCAGCCTCTGCTGGTCAGGTAGGATGCCTTCCTTGTCTT 3874333 Query 21085 CGATCTT 21091 |||||| Sbjct 3874332 GGATCTT 3874326 >seq37 Length=11501336 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| |||||| | || || |||| |||| | | Sbjct 11476664 CCCCTC--AGACAGAGGACCAGGTGCAGGGTGGACCCTTTCTGGATGT---AGTCAGAAA 11476718 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||||| | | || |||| |||||||| | | | Sbjct 11476719 GAGTGCGGCCATCTTCCAGCTGCTTGCCCGAAAAGATGAGTCGTTGCTGGTCAGGGAGGA 11476778 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| || | || |||||| || || | ||| ||||||| |||||| | Sbjct 11476779 TGCCCTCTTCATCCTGGATCTTGGCCTTGACATTCTCGATGGTATCACTAGGCTCCACCT 11476838 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 | | ||| |||||||||| ||| | || || || || ||||||||||||| Sbjct 11476839 CTAGGGTGATGGTCTTGCTGGTCAGGGTCTTCACGAAGATTTGCATTTTGA 11476889 >seq4 Length=18898765 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/202 (70%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| |||||||| || || ||||| ||||| | | Sbjct 11612646 CCCCTC--AGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAA 11612703 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || || |||||||| |||| ||| ||| |||| || |||||| | ||| | Sbjct 11612704 GAGTGCGGCTATCTTCCAGCTGCTTGCTGGCA--AATGAGTCACTACTGGTC-AGGGGGA 11612760 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| || || || |||||| ||||| | ||| || |||| |||||| | | Sbjct 11612761 TGCCCTCTTTATCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTAGGCTCCATCT 11612820 Query 21130 CCACGGTAATGGTCTTGCCGGT 21151 | | ||| ||||||||||| || Sbjct 11612821 CTAGGGTGATGGTCTTGCCAGT 11612842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422100071752436