Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq498 228 8e-55 seq1345 170 2e-37 seq6 141 1e-28 seq31 122 9e-23 seq37 118 1e-21 seq78 107 2e-18 seq70 98.7 1e-15 seq309 96.9 4e-15 seq184 96.9 4e-15 seq3 96.9 4e-15 seq4 95.1 1e-14 seq28 86.0 6e-12 seq366 84.2 2e-11 seq120 84.2 2e-11 >seq498 Length=2542268 Score = 228 bits (252), Expect = 8e-55 Identities = 524/781 (67%), Gaps = 31/781 (4%) Strand=Plus/Minus Query 116585 CTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGC 116644 ||| | || ||||||| || ||| | || || ||||| |||||| || || |||| | Sbjct 2187216 CTGAGAGAAAACCCCCAGCGCTTCATCATGTTTCCCATCAAATACCATGATATCTGGCAC 2187157 Query 116645 ATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGAC 116704 |||||||| || || ||||| || || || ||| | ||||| || Sbjct 2187156 ATGTACAAGAAAGCGGAGGCCTCCTTTTGAACCTT----------------TCCAAAGAT 2187113 Query 116705 A-CGAGCGACTGGG-AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGG 116762 | | ||| |||||| ||| || ||| | | ||| | ||||| || ||||| | | Sbjct 2187112 ATCCAGC-ACTGGGGAGCTCTGAAAC--CCAGGAGAGACATTTTATACCTCACGTTCGTG 2187056 Query 116763 CCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-TTTCGCTCAG 116821 | || ||||| || || ||| |||| ||||| ||||| ||| |||| ||| || || Sbjct 2187055 CTTTCTTCGCAGCGAGTGACAGCATAGTCAATGAGAACTTGG---AGCGATTTAGC-CAA 2187000 Query 116822 GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTG 116881 || || || || | ||||| || || ||||| ||||| || || |||||||| ||| | Sbjct 2186999 GAAGTTCAAGTCACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATA 2186940 Query 116882 CACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTC 116941 || || |||||||| ||| || ||||| ||| | ||| |||||| | Sbjct 2186939 CATTCTGAAATGTACAGTCTCCTTATTGACACCTACATTAAAGATTCTAAGGAGAGGGAG 2186880 Query 116942 CGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTG 117001 | | || | || || || |||||||| | || || |||||||||| ||||| || Sbjct 2186879 TATCTCTTCATTGCTATAGAAACGATGCCTTCTGTGAAGAAGAAGGCCGACTGGGCCTTG 2186820 Query 117002 CGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTC 117061 || ||||| | || |||||| | | | | || || | || ||||| || ||||| Sbjct 2186819 CGTTGGATTTGGGACAAAGAGGCTACATACAGAGAACGTGTTGTCGCCTTTGCCGCCGTG 2186760 Query 117062 GAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTC 117121 || ||| ||||||| || |||| | | ||||| ||||||||||| | || || Sbjct 2186759 GAAGGCATCTTCTTC---GGTTCTTTCACATCAATATTCTGGCTCAAGAAGCAGGGACTG 2186703 Query 117122 ATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGAC 117181 ||||||||||| || || ||| ||||| ||| ||| |||||||| | || || ||| Sbjct 2186702 ATGCCCGGCCTTACATTTTCCAATGAGCTTATCAGCAGAGACGAGGGCTTACACTGTGAC 2186643 Query 117182 TTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC-GCGCGTCAGGGA 117240 |||||||| || |||||||||| |||| || | | | | || || | | || | || Sbjct 2186642 TTTGCCTGCCTGATGTTCAAGCACCTGGTACA-CAAGCCATCGGAGCAGAGGGTAAAAGA 2186584 Query 117241 GATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCG 117300 || | | |||| || || |||||| ||||| || || || |||| ||| Sbjct 2186583 AATAATTGTCAACGCAGTGAGGATAGAGCAGAAGTTCCTTACGGAGGCCTTGCCTGTGAA 2186524 Query 117301 TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCT 117360 || | || | || ||| |||| ||| ||||||||||| || || |||||||| Sbjct 2186523 GCTCATCGGGATGAACTGCACTCTGATGAAGCAGTACATCGAGTTTGTGGCAGACAGGCT 2186464 Query 117361 G 117361 | Sbjct 2186463 G 2186463 >seq1345 Length=786133 Score = 170 bits (188), Expect = 2e-37 Identities = 509/786 (65%), Gaps = 36/786 (5%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 || ||||||| | | || || || || ||||| |||||| || || |||| |||||| Sbjct 220350 GAAAACCCCCACTGCTTTGTCATCTTTCCCATCAAATACCATGATATCTGGCAGATGTAC 220409 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || || | ||||| || || ||||| | |||||||||||||| |||||||| | Sbjct 220410 AAGAAAGATGAGGCCTCCTTTTGGACGGCTGAGGAGGTGGACCTTTCCAAGGATATTCAG 220469 Query 116711 GACTGGGAGCGCT-TGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||| ||| |||| || ||| | ||| | || || || | ||| || || Sbjct 220470 TACTGGGAA-GCTCTGAAACCCAGTGAGAGACATGTTATACCTCATGTTCGGGCTTTCTT 220528 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCA 116829 || || || ||| |||| ||||| ||||| |||| | | ||| || || || || Sbjct 220529 TGCAGCAAGTGACAGCATAGTCAATGAGAACTTGGTGAAACTATTCAGCCAAGAAGTTCA 220588 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 || | |||| || || ||||| ||||| || || | ||| || || | || || || Sbjct 220589 AGTCACAGAGGTCCGCTGTTTCTATGGCTTCCAAATTGGCATAGAAAATATACATTCTGA 220648 Query 116890 AATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTT 116949 |||||| ||| || ||||| | | ||| |||||| | | | || Sbjct 220649 AATGTACAGTCTCCTTATTGACACATTAAAGA----TTCCAAGGAGAGGGAGTATCTCTT 220704 Query 116950 GAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGAT 117009 || || || || | |||||| ||||| ||| |||| Sbjct 220705 CAATGCTATTGAAAAGATGCCTTGCGT-----------------------TGCACTGGG- 220740 Query 117010 CGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGT 117069 | || || ||| | | || || | | |||||||| || ||||| || ||| | Sbjct 220741 ----GACAAAGGGGCTACATATGGAGAATGTGTTGTGGCCTTTGCCGCCGTGGAAGGCAT 220796 Query 117070 CTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGG 117129 ||||||||| || ||| || | ||||| ||||| ||||| || || || |||||||| Sbjct 220797 CTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTGAAGAAGCGGGGACTTATGCCCGG 220856 Query 117130 CCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 ||| || || ||| ||||| ||| ||| || ||||| | ||||| ||||||||||| Sbjct 220857 CCTTACATTTTCCAATGAGCTTATCAGCAGAGATGAGGGCTTACATTGTGACTTTGCCTG 220916 Query 117190 TTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC-GCGCGTCAGGGAGATCGTCA 117248 || |||||||||| |||| || | | | | | || | | || || | || | | Sbjct 220917 CCTGATGTTCAAGCACCTGGTACA-CAAGCCATAGGAGCAGAGAGTAAGTAAAATAATTA 220975 Query 117249 CCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGG 117308 | || | || |||||| |||||||| || || |||| ||| || | | Sbjct 220976 TGAATGCCATGAGGATAGAGCAGGAGTTCCTCACGGAGGCCTTGCCTGTGAAGCTTATCG 221035 Query 117309 GACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCG 117368 | | || || | |||| ||| ||||| || || || | ||||||||| |||| | Sbjct 221036 GGATGAACCGCAATCTGATGAAGCAGTACATTGAATTTGTGGTGGACAGGCTGATGCTGG 221095 Query 117369 AGCTGG 117374 |||||| Sbjct 221096 AGCTGG 221101 >seq6 Length=12818899 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| | || || || ||||||||| | || ||||| ||| Sbjct 2580275 AATGCAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCCTAGAGGTCGAGCCCAG 2580334 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| ||| || | ||||||||||| |||||| | ||||| Sbjct 2580335 TGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCCCCTGACCA 2580394 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||||| |||||||| Sbjct 2580395 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 2580454 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| |||| ||||| || || | || | ||||| || Sbjct 2580455 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGGGGTGG 2580502 >seq31 Length=11202321 Score = 122 bits (134), Expect = 9e-23 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || ||||||||||||||| | |||||||| |||||||||| || ||||| |||||||| Sbjct 8040074 GATAAAGAGGGCATCCCCCCAGACCAGCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAA 8040015 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||| || ||||||||||||||||| ||| |||| ||||| || || | Sbjct 8040014 GATGGGCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTC 8039955 Query 40903 CGCTTGAGGGGCGGC 40917 || ||||||| ||| Sbjct 8039954 CGTCTGAGGGGTGGC 8039940 Score = 118 bits (130), Expect = 1e-21 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || || || ||||| ||||||||| | || || || || Sbjct 8041143 AAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCC 8041084 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | || ||||||||||||||| | ||| Sbjct 8041083 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGAC 8041024 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 40856 ||||| |||||||||| || ||||| |||||||| || | |||||||| Sbjct 8041023 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCT 8040974 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | || ||||||||||| || | |||||||| | |||||||| | Sbjct 7312508 TCAAGGCCAAGATCCAAGATAAAGAGGGCATGCCTCCCGACCAGCAGCAACTCATCTTTG 7312567 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | |||| |||||| | || | | ||| || ||||||||||||||||| ||| | | Sbjct 7312568 CCAGCAAGCAGCTGAAAGATGGCCCCACTCTTTTTGACTACAACATCCAGAAAGAGTCTA 7312627 Query 40886 CGCTGCATCTAGT 40898 | ||||| || || Sbjct 7312628 CCCTGCACCTGGT 7312640 >seq37 Length=11501336 Score = 118 bits (130), Expect = 1e-21 Identities = 165/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || || || |||| ||||||||| | || || || | Sbjct 11476887 AAAATGCAAATCTTCGTGAAGACCCTGACCAGCAAGACCATCACCCTAGAGGTGGAGCCT 11476828 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||||| || || | || |||||||||||| | | ||| Sbjct 11476827 AGTGATACCATCGAGAATGTCAAGGCCAAGATCCAGGATGAAGAGGGCATCCTCCCTGAC 11476768 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||||||||||||| ||||||| |||||||| || | ||||| || |||| Sbjct 11476767 CAGCAACGACTCATCTTTTCGGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACT-- 11476710 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||| | | |||| ||||| || || | | ||||||| ||| Sbjct 11476709 -ACATCCAGAAAGGGTCCACCCTGCACCTGGTCCTCTGTCTGAGGGGTGGC 11476660 >seq78 Length=6419775 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 ||||||||||| ||||| || ||| ||||||| || || |||||| ||||||| ||| Sbjct 5585684 GTGGCCTTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGTTCTTTCGCATCCATATTCTGG 5585625 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 |||||||| || || || ||||||||||| || || ||| ||||| ||| ||| ||| Sbjct 5585624 CTCAAGAAGCGGGGACTGATGCCCGGCCTTACATTTTCCAATGAGCTTATCAGCAGAGAC 5585565 Query 117164 GAGG 117167 |||| Sbjct 5585564 GAGG 5585561 >seq70 Length=7483708 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || |||||||| |||||||| | || ||||| | Sbjct 5585921 AACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCT 5585862 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| || | |||||| | ||| Sbjct 5585861 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGACATCCCACCAGAC 5585802 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || | || |||||||||||||| || | |||||| || || Sbjct 5585801 CAGCAGAAGCTGATATTTGCTGGCAAACAGCTGGAGGATCGCCTCACCCTGTCAGATTAA 5585742 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 ||||||||||| ||| |||| |||| || ||| ||||| || Sbjct 5585741 AACATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGCCTG 5585700 >seq309 Length=1536079 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| ||||||||||| |||| || ||| || | Sbjct 714607 ATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 714666 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| || || | || || || || || || | || ||| Sbjct 714667 GACACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAG 714726 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| || || |||||||| || | || || | || ||||| Sbjct 714727 CAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAATACAAT 714786 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || || |||||| |||| || ||||| |||||| Sbjct 714787 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTG 714819 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| ||||||||||| |||| || ||| || | Sbjct 713245 ATGCAGATTTTCGTGAAGACCCTCACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 713304 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| || || | || || || || || || | || ||| Sbjct 713305 GACACGATAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCTCCTGATCAG 713364 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | || |||| || || || |||||||| || | || || | || ||||| Sbjct 713365 CAAAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACTTT----GAATACAAT 713420 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || || |||||| |||| || ||||| |||||| Sbjct 713421 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTG 713453 >seq184 Length=3314118 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 ||||||||||||| ||||| || ||| | ||||| || || || || || ||||| | Sbjct 1994201 TGGTGGCCTTCGCCGCCGTGGAAGGCATTTTCTTCTCTGGGTCATTTGCTGCTATATTCT 1994142 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | |||||||||||||| || ||||| || ||||||||| ||||| Sbjct 1994141 GGCTGAAGAAGAGAGGCCTCATGCCCGGACTCACTTTTTCAAATGAGCTCATCAGCAGGG 1994082 Query 117162 ACGAGG 117167 | |||| Sbjct 1994081 ATGAGG 1994076 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||||||| ||||||||||||||| | ||||| || || ||||| |||||||| Sbjct 1999473 GGTGGAGCGTTTCAGTCAGGAGGTGCAGGTTCCAGAGGCCCGCTGTTTCTATGGCTTTCA 1999414 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 ||| ||| ||||| || || || || ||||| Sbjct 1999413 GATTCTCATCGAGAATGTTCATTCAGAGATGTA 1999381 >seq3 Length=5748141 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/223 (70%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| | |||||| | || ||||| | Sbjct 3927526 AACATGCAGATCTTTGTGAAGACCCTGACAGGCAAGAACATCACTCTAGAGGTCGAGCCT 3927467 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | || || || |||||||| | ||| Sbjct 3927466 AGTGACACCATCGAGAATGTCAAGGTCAAGATCCAAGATAAGGAAGGCATCCCACCAGAC 3927407 Query 40807 CAGCAACGACTCATC-TACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| | || || | || |||| ||||||| || | |||||||| ||||| Sbjct 3927406 CAGCAGAGGCTGATAATTTGCCAGCAAGCAGCTGGGTGATGGCCGCACCCTGTCAGACTA 3927347 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 |||||||||||| ||| |||| ||||| || ||| ||||| || Sbjct 3927346 CAACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTG 3927304 >seq4 Length=18898765 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 40707 AACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCT 40766 ||| || || ||||| ||||||||| | || | || | | |||| | | | | | Sbjct 11612849 AACCCTGACTGGCAAGACCATCACCCTAGAGATGGAGCCTAGTGACACCATCGAGAATGT 11612790 Query 40767 CAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGC 40826 |||| || || | || ||||||||||||||| | |||||| | ||||||| | || Sbjct 11612789 GAAGGCCAAGATCCAAGATAAAGAGGGCATCCCC-CTGACCAGTAGTGACTCATTT--GC 11612733 Query 40827 GGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCAC 40886 |||| |||||||| || ||||| || ||||||||||||||||| ||| |||| Sbjct 11612732 CAGCAAGCAGCTGGAAGATAGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCCAC 11612673 Query 40887 GCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| || || | || ||||||| ||| Sbjct 11612672 CCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 11612642 >seq28 Length=9942386 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || | |||| ||| |||||||| || | || || | Sbjct 239381 AACATGCAGATCTTGGTGAAGACCTTGACGGACAAGACCATCAC--TCCAGGTGGAGCTC 239324 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || | | ||||| || ||||||| | || Sbjct 239323 AGTGACACCATCAAGAATGTCAAGGCCAAGACCCAAGACAAGGAAGGCATCCTACCTGAT 239264 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || || | || |||| |||||||| || | ||||||| ||||| Sbjct 239263 CAGCACAGGCTGATATTTGCCAGCAAGCAGCTGGA-GATGGCTGCACCCTGTCTGACTAT 239205 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| ||| |||| ||||| |||||| ||||| || | || ||| Sbjct 239204 AACATCCAGAAAGAGTCCACCCTGCACCTAGTGCTGCGCCTGCGTGGTGGC 239154 >seq366 Length=4409749 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 40720 AAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATT 40779 || |||||||| | || ||||| ||| |||| | | | | |||||| || || Sbjct 1116403 AAGACCATCACTCTTGAGGTCGAGCCCAGTGACACCATTGAGAATGTCAAGGCCAAGATC 1116344 Query 40780 CTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTG 40839 | || || || |||||||| | |||||||| | || || | || || || |||||| Sbjct 1116343 CAAGATAAGGAAGGCATCCCACCAGACCAGCAGAGGCTGATATTTGCCGGAAAGCAGCTG 1116284 Query 40840 GACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || || | | |||||| ||||||||||||||||| ||| ||| |||| || ||| Sbjct 1116283 GAGGATGGCCACACCCTGTCGGACTACAACATCCAGAAAGAGTTCACCTTGCACCTGGTG 1116224 Query 40900 TTGCGC 40905 ||||| Sbjct 1116223 CTGCGC 1116218 >seq120 Length=4857412 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 || ||||| || || || | |||||| |||||||| | || ||| | || |||| | Sbjct 3874248 ATCTTCGTGAAGACCCTGAGGGGCAAGACCATCACTCTTGAGGTCTAGCTCAGTGACACC 3874307 Query 40756 GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | | |||||| || || | ||||| || ||||||| | |||||||| | Sbjct 3874308 ATCAAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGCATCCTACCTGACCAGCAGAGG 3874367 Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 || | | || ||||| |||||||| || | |||| || ||||||||||||||| Sbjct 3874368 CTGACATTTGCTGGCAAGCAGCTGGAGGATGGCGGCACTCTGTCGGACTACAACATCCAG 3874427 Query 40876 AAGGAGGCCACGCTGCATCTAGTG 40899 || ||| ||| ||||||| ||| Sbjct 3874428 AAAGAGTCCATCTTGCATCTGGTG 3874451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515020061338960