Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq309 109 5e-19
seq31 84.2 2e-11
>seq309
Length=1536079
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||||||||| | || | || ||||| |||||||| ||||| ||
Sbjct 714834 ACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGA 714775
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| ||| || ||| || ||||| || |||||| |||| || | ||||||||| |||||
Sbjct 714774 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGG 714715
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || ||||| || || || || || | ||| | ||||||| | || ||
Sbjct 714714 AATACCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAAC 714655
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || | ||||| || || || || || || |||||||||||
Sbjct 714654 CTCGAGCGTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 4/228 (2%)
Strand=Plus/Minus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||||||||| | || | || ||||| |||||||| ||||| ||
Sbjct 713468 ACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTC--- 713412
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
| ||| || ||| || ||||| || ||||| |||| || | |||||||| |||||
Sbjct 713411 -AAAGTACGACCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 713353
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || ||||| || || || || | | ||| | ||||||| | || ||
Sbjct 713352 AATACCTTCCTTATCCTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAAC 713293
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || | ||||| || || || || || || |||||||||||
Sbjct 713292 CTCGAGCGTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245
>seq31
Length=11202321
Score = 84.2 bits (92), Expect = 2e-11
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 118575 GTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATG 118634
||||| ||| || ||||| || ||||| ||||||| |||||||| || || || |||
Sbjct 8040977 GTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATG 8041036
Query 118635 CCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCG 118694
||||| || || || || || || | |||| |||||| || ||| || ||
Sbjct 8041037 CCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCC 8041096
Query 118695 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
| ||| | || ||||||||||| || || || || ||||||||
Sbjct 8041097 AGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8041140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433666911149332
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |