Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq309 114 1e-20 seq2456 100 3e-16 seq1844 100 3e-16 seq746 100 3e-16 seq470 100 3e-16 seq387 100 3e-16 seq6 100 3e-16 seq375 98.7 1e-15 seq31 98.7 1e-15 seq154 91.5 2e-13 seq129 91.5 2e-13 seq324 89.7 6e-13 seq314 89.7 6e-13 seq153 89.7 6e-13 seq71 89.7 6e-13 seq52 89.7 6e-13 seq758 82.4 9e-11 seq138 82.4 9e-11 >seq309 Length=1536079 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||| | ||| | ||| |||||||||||||||||| |||| || ||| || | || Sbjct 714819 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATC 714760 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || ||||||||||||||||| || || | |||||| || | || | | ||||| || Sbjct 714759 TTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATC 714700 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || || | | | | |||||| | ||| || |||| ||||||||| Sbjct 714699 CTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 714640 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || ||||| || || || ||||| Sbjct 714639 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||| | ||| | ||| |||||||||||||||||| ||| ||| || | || Sbjct 713453 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAA----AGTACGACCATC 713398 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || |||||||||||||| || || || | ||||| || | || | | ||||| || Sbjct 713397 TTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATC 713338 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || || | | | | |||||| | ||| || |||| ||||||||| Sbjct 713337 CTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 713278 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || ||||| || || || ||||| Sbjct 713277 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245 >seq2456 Length=20424 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 4484 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4543 Query 60125 ATACTACCGAGGA 60137 |||||| || ||| Sbjct 4544 ATACTAACGGGGA 4556 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 20055 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 20114 Query 60125 ATACTACCGAGGA 60137 |||||| || ||| Sbjct 20115 ATACTAACGGGGA 20127 >seq1844 Length=33621 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 363 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 304 Query 60125 ATACTACCGAGGA 60137 |||||| || ||| Sbjct 303 ATACTAACGGGGA 291 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 9132 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 9073 Query 60125 ATACTACCGAGGA 60137 |||||| || ||| Sbjct 9072 ATACTAACGGGGA 9060 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 26051 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 26110 Query 60125 ATACTACCGAGGA 60137 |||||| || ||| Sbjct 26111 ATACTAACGGGGA 26123 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||||||| | ||||||||||||| ||||||||||||||||||||| |||||||| ||| Sbjct 32923 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACTACT 32982 Query 60125 ATACTACCGAGGA 60137 |||||| || ||| Sbjct 32983 ATACTAACGGGGA 32995 >seq746 Length=847536 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 807479 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 807538 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 807539 TACTAACGAGGAT 807551 Score = 91.5 bits (100), Expect = 2e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 60070 TCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACT 60129 ||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 840507 TCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACT 840448 Query 60130 ACCGAGGA 60137 | || ||| Sbjct 840447 AACGGGGA 840440 >seq470 Length=2777046 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2748964 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2749023 Query 60125 ATACTACCGAGGA 60137 |||||| || ||| Sbjct 2749024 ATACTAACGGGGA 2749036 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||||||| | ||||||||||||| ||||||||| ||||||||||| |||||||||||| Sbjct 2770980 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGGGTGACAGGCGGGGATACTCACCACT 2770921 Query 60125 ATACTACCGAGGA 60137 |||||| || ||| Sbjct 2770920 ATACTAACGGGGA 2770908 >seq387 Length=3314187 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 191350 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 191291 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 191290 ATACTAACGAGGA 191278 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 230732 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 230791 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 230792 CTATACTAACGAGGA 230806 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||| | | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 197846 CTCCTTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 197787 Query 60126 TACTACCGAGGATTG 60140 ||||| | |||| || Sbjct 197786 TACTAACAAGGAATG 197772 >seq6 Length=12818899 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2560922 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2560863 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 2560862 ATACTAACGAGGA 2560850 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2563967 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2563908 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 2563907 ATACTAACGAGGA 2563895 >seq375 Length=1960377 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 853673 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 853614 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 853613 TACTAACGAGGA 853602 >seq31 Length=11202321 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1386002 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1386061 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1386062 TACTAACGAGGA 1386073 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| ||||| || ||||||||||||||||| | || | || ||| || Sbjct 8040986 TCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTA 8041045 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || |||| || | | ||||| || | ||||| || | |||||| Sbjct 8041046 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 8041105 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || ||||| || || ||||| || ||||| |||||||| || Sbjct 8041106 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGAC 8041146 >seq154 Length=6791889 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||| | ||| | ||| ||||| ||||||| |||| |||| || ||| || | || Sbjct 1707851 CAACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGGCCATC 1707792 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || ||||||||||||||||| | || | |||||| || | || | | | ||| || Sbjct 1707791 TTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTGCTTATC 1707732 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || || | | | | |||||| | ||| || |||| | ||||||| Sbjct 1707731 CTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCATGATGGT 1707672 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || ||||| || || || ||||| Sbjct 1707671 TTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 1707639 >seq129 Length=5885081 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 567342 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 567283 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 567282 ATACTAACGAGGA 567270 >seq324 Length=2124287 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||| | | ||||||||||||| ||||||||| ||||||||||| ||||||||||||| Sbjct 1973492 CTCCTTGTCGGGGAATCGAACCCCGGTCTCCCGTGTGACAGGCGGGGATACTCACCACTA 1973433 Query 60126 TACTACCGAGGA 60137 ||||| | |||| Sbjct 1973432 TACTAACAAGGA 1973421 >seq314 Length=4067486 Score = 89.7 bits (98), Expect = 6e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||| | ||||||||| ||||| ||||||||||||||||||||| ||||||||||||| Sbjct 768876 CTCCTTGTCAGGGAATCAAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 768935 Query 60126 TACT 60129 |||| Sbjct 768936 TACT 768939 >seq153 Length=7306735 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||| | ||||||||||||||| ||||||||||||||||| || ||||||||||||| Sbjct 3174135 CTCCTTGTCAGGGAATCGAACCCCAGTCTCCCGCGTGACAGGTGGGGATACTCACCACTA 3174194 Query 60126 TACTACCGAGGA 60137 ||||| | |||| Sbjct 3174195 TACTAACAAGGA 3174206 >seq71 Length=5144731 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 60067 TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 60126 |||||| | ||||||||||||| ||||||| ||||||||||||| |||||||||||||| Sbjct 1854193 TCCTCGTCGGGGAATCGAACCCCGGTCTCCTGCGTGACAGGCGGGGATACTCACCACTAT 1854252 Query 60127 ACTACCG 60133 |||| || Sbjct 1854253 ACTAACG 1854259 >seq52 Length=8937789 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| | | |||||| |||||||||||||| ||||||||||||| ||||||||||| Sbjct 2398496 TTCTCCCCATCGGGGAATTGAACCCTGGTCTCCTGCGTGACAGGCGGGGATACTCACCAC 2398437 Query 60124 TATACTACCGAGGA 60137 ||||||| | |||| Sbjct 2398436 TATACTAACAAGGA 2398423 >seq758 Length=530507 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||| |||| | ||||||||||||| | |||| ||||||||||||| |||||||||||| Sbjct 120787 TCTTCTCGTCGGGGAATCGAACCCCAGACTCCGGCGTGACAGGCGGGGATACTCACCACT 120728 Query 60125 ATACTACCGAGGA 60137 |||||| || ||| Sbjct 120727 ATACTAACGGGGA 120715 >seq138 Length=8324512 Score = 82.4 bits (90), Expect = 9e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| Sbjct 4614047 GGGAATCGAACACTGGTCTCCCGAGTGACAGGCGGGGATACTCACCACTATACTA 4614101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571596585349880