Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq309 114 1e-20
seq2456 100 3e-16
seq1844 100 3e-16
seq746 100 3e-16
seq470 100 3e-16
seq387 100 3e-16
seq6 100 3e-16
seq375 98.7 1e-15
seq31 98.7 1e-15
seq154 91.5 2e-13
seq129 91.5 2e-13
seq324 89.7 6e-13
seq314 89.7 6e-13
seq153 89.7 6e-13
seq71 89.7 6e-13
seq52 89.7 6e-13
seq758 82.4 9e-11
seq138 82.4 9e-11
>seq309
Length=1536079
Score = 114 bits (126), Expect = 1e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030
|||||| | ||| | ||| |||||||||||||||||| |||| || ||| || | ||
Sbjct 714819 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGACAAAGTACGGCCATC 714760
Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090
|| ||||||||||||||||| || || | |||||| || | || | | ||||| ||
Sbjct 714759 TTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTATC 714700
Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150
| ||| || || | | | | |||||| | ||| || |||| |||||||||
Sbjct 714699 CTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 714640
Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| ||||| || ||||| || || || |||||
Sbjct 714639 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 714607
Score = 91.5 bits (100), Expect = 2e-13
Identities = 148/213 (69%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030
|||||| | ||| | ||| |||||||||||||||||| ||| ||| || | ||
Sbjct 713453 CAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAA----AGTACGACCATC 713398
Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090
|| |||||||||||||| || || || | ||||| || | || | | ||||| ||
Sbjct 713397 TTCCAGCTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATC 713338
Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150
| ||| || || | | | | |||||| | ||| || |||| |||||||||
Sbjct 713337 CTGGATCTTGGCCTTTATATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 713278
Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| ||||| || ||||| || || || |||||
Sbjct 713277 TTTCCCCGTGAGGGTCTTCACGAAAATCTGCAT 713245
>seq2456
Length=20424
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
|||||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 4484 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4543
Query 60125 ATACTACCGAGGA 60137
|||||| || |||
Sbjct 4544 ATACTAACGGGGA 4556
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
|||||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 20055 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 20114
Query 60125 ATACTACCGAGGA 60137
|||||| || |||
Sbjct 20115 ATACTAACGGGGA 20127
>seq1844
Length=33621
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
|||||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 363 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 304
Query 60125 ATACTACCGAGGA 60137
|||||| || |||
Sbjct 303 ATACTAACGGGGA 291
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
|||||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 9132 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 9073
Query 60125 ATACTACCGAGGA 60137
|||||| || |||
Sbjct 9072 ATACTAACGGGGA 9060
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
|||||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 26051 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 26110
Query 60125 ATACTACCGAGGA 60137
|||||| || |||
Sbjct 26111 ATACTAACGGGGA 26123
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
|||||||| | ||||||||||||| ||||||||||||||||||||| |||||||| |||
Sbjct 32923 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACTACT 32982
Query 60125 ATACTACCGAGGA 60137
|||||| || |||
Sbjct 32983 ATACTAACGGGGA 32995
>seq746
Length=847536
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 807479 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 807538
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 807539 TACTAACGAGGAT 807551
Score = 91.5 bits (100), Expect = 2e-13
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 60070 TCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACT 60129
||| | ||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 840507 TCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACT 840448
Query 60130 ACCGAGGA 60137
| || |||
Sbjct 840447 AACGGGGA 840440
>seq470
Length=2777046
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
|||||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2748964 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2749023
Query 60125 ATACTACCGAGGA 60137
|||||| || |||
Sbjct 2749024 ATACTAACGGGGA 2749036
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
|||||||| | ||||||||||||| ||||||||| ||||||||||| ||||||||||||
Sbjct 2770980 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGGGTGACAGGCGGGGATACTCACCACT 2770921
Query 60125 ATACTACCGAGGA 60137
|||||| || |||
Sbjct 2770920 ATACTAACGGGGA 2770908
>seq387
Length=3314187
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 191350 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 191291
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 191290 ATACTAACGAGGA 191278
Score = 100 bits (110), Expect = 3e-16
Identities = 67/75 (89%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
|| |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 230732 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 230791
Query 60123 CTATACTACCGAGGA 60137
|||||||| ||||||
Sbjct 230792 CTATACTAACGAGGA 230806
Score = 95.1 bits (104), Expect = 1e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
||||| | | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 197846 CTCCTTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 197787
Query 60126 TACTACCGAGGATTG 60140
||||| | |||| ||
Sbjct 197786 TACTAACAAGGAATG 197772
>seq6
Length=12818899
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2560922 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2560863
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 2560862 ATACTAACGAGGA 2560850
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2563967 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2563908
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 2563907 ATACTAACGAGGA 2563895
>seq375
Length=1960377
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 853673 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 853614
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 853613 TACTAACGAGGA 853602
>seq31
Length=11202321
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1386002 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1386061
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 1386062 TACTAACGAGGA 1386073
Score = 96.9 bits (106), Expect = 4e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| ||||| || ||||||||||||||||| | || | || ||| ||
Sbjct 8040986 TCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTA 8041045
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
||| ||| || |||| || | | ||||| || | ||||| || | ||||||
Sbjct 8041046 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 8041105
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189
|| ||||| || || ||||| || ||||| |||||||| ||
Sbjct 8041106 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGAC 8041146
>seq154
Length=6791889
Score = 91.5 bits (100), Expect = 2e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030
|||||| | ||| | ||| ||||| ||||||| |||| |||| || ||| || | ||
Sbjct 1707851 CAACACAAGATGAAGGGTGGACTCCTATTGAATACTGTAGTCAGACAAAGTACGGCCATC 1707792
Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090
|| ||||||||||||||||| | || | |||||| || | || | | | ||| ||
Sbjct 1707791 TTCCAGCTGCTTACCAGCGAAGCTCAGCCTCTGCTGATCAGGAGGAATTCCTTGCTTATC 1707732
Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150
| ||| || || | | | | |||||| | ||| || |||| | |||||||
Sbjct 1707731 CTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACCTCGAGCATGATGGT 1707672
Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| ||||| || ||||| || || || |||||
Sbjct 1707671 TTTCCCCGTGAGGGTCTTCACGAATATCTGCAT 1707639
>seq129
Length=5885081
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 567342 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 567283
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 567282 ATACTAACGAGGA 567270
>seq324
Length=2124287
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
||||| | | ||||||||||||| ||||||||| ||||||||||| |||||||||||||
Sbjct 1973492 CTCCTTGTCGGGGAATCGAACCCCGGTCTCCCGTGTGACAGGCGGGGATACTCACCACTA 1973433
Query 60126 TACTACCGAGGA 60137
||||| | ||||
Sbjct 1973432 TACTAACAAGGA 1973421
>seq314
Length=4067486
Score = 89.7 bits (98), Expect = 6e-13
Identities = 58/64 (91%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
||||| | ||||||||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 768876 CTCCTTGTCAGGGAATCAAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 768935
Query 60126 TACT 60129
||||
Sbjct 768936 TACT 768939
>seq153
Length=7306735
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
||||| | ||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 3174135 CTCCTTGTCAGGGAATCGAACCCCAGTCTCCCGCGTGACAGGTGGGGATACTCACCACTA 3174194
Query 60126 TACTACCGAGGA 60137
||||| | ||||
Sbjct 3174195 TACTAACAAGGA 3174206
>seq71
Length=5144731
Score = 89.7 bits (98), Expect = 6e-13
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 60067 TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 60126
|||||| | ||||||||||||| ||||||| ||||||||||||| ||||||||||||||
Sbjct 1854193 TCCTCGTCGGGGAATCGAACCCCGGTCTCCTGCGTGACAGGCGGGGATACTCACCACTAT 1854252
Query 60127 ACTACCG 60133
|||| ||
Sbjct 1854253 ACTAACG 1854259
>seq52
Length=8937789
Score = 89.7 bits (98), Expect = 6e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| | | |||||| |||||||||||||| ||||||||||||| |||||||||||
Sbjct 2398496 TTCTCCCCATCGGGGAATTGAACCCTGGTCTCCTGCGTGACAGGCGGGGATACTCACCAC 2398437
Query 60124 TATACTACCGAGGA 60137
||||||| | ||||
Sbjct 2398436 TATACTAACAAGGA 2398423
>seq758
Length=530507
Score = 82.4 bits (90), Expect = 9e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||| |||| | ||||||||||||| | |||| ||||||||||||| ||||||||||||
Sbjct 120787 TCTTCTCGTCGGGGAATCGAACCCCAGACTCCGGCGTGACAGGCGGGGATACTCACCACT 120728
Query 60125 ATACTACCGAGGA 60137
|||||| || |||
Sbjct 120727 ATACTAACGGGGA 120715
>seq138
Length=8324512
Score = 82.4 bits (90), Expect = 9e-11
Identities = 51/55 (93%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130
||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 4614047 GGGAATCGAACACTGGTCTCCCGAGTGACAGGCGGGGATACTCACCACTATACTA 4614101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571596585349880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |