Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq6 113 3e-20 seq70 95.1 8e-15 seq3 93.3 3e-14 seq309 91.5 1e-13 seq31 84.2 1e-11 >seq6 Length=12818899 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| |||||||| ||||||||||| ||||| ||| | || Sbjct 2580487 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 2580428 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||||||||| || || |||| ||||||||| ||| | | ||| ||||| Sbjct 2580427 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCC 2580368 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | || | || | | ||||| || | |||||||| Sbjct 2580367 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTC 2580308 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | |||||||| ||||||||||| Sbjct 2580307 TTACCAGTTAAGGTTTTCACGAAGATCTGCAT 2580276 >seq70 Length=7483708 Score = 95.1 bits (104), Expect = 8e-15 Identities = 155/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 34170 GCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACA-GCTGA 34228 |||| | |||||||||||| || || |||||||| ||||| || || |||| | ||| Sbjct 5585699 GCAGGCGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTTTAATCTGACAGGGTGA 5585758 Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288 || || |||| ||| ||||| || || || ||| ||||||||| || | | Sbjct 5585759 -GGCGATCCTCCAGCTGTTTGCCAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCT 5585817 Query 34289 TCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACC 34348 |||||||| ||||| ||| | || | || | || | | ||||| || | Sbjct 5585818 TCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGA 5585877 Query 34349 GTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| ||||| || || || ||||||||||||||||| Sbjct 5585878 GTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 5585918 >seq3 Length=5748141 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/221 (70%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 34170 GCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGAC 34229 |||| | |||||||||||| | || |||||||| ||||||||||| ||||| | Sbjct 3927303 GCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGC 3927362 Query 34230 GGTCGTCGTCCAACTGCTTGCCTGCGAA-AATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288 || | || ||| |||||||| || || || |||| ||||||||| || | || Sbjct 3927363 GGCCATCACCCAGCTGCTTGCTGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCT 3927422 Query 34289 TCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACC 34348 ||||| || ||||| ||| | || | || | || | | ||||| || | Sbjct 3927423 TCCTTATCTTGGATCTTGACCTTGACATTCTCGATGGTGTCACTAGGCTCGACCTCTAGA 3927482 Query 34349 GTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||| | ||||| || || || ||||||||||||||||| Sbjct 3927483 GTGATGTTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 3927523 >seq309 Length=1536079 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || |||| ||| || || | || || || || || ||||| || ||| Sbjct 714833 CCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGAC 714774 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| | || |||| |||||| || ||||| || |||| |||||| || || Sbjct 714773 AAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGA 714714 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || ||||| ||||| || |||||| || | | ||| || Sbjct 714713 ATACCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACC 714654 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||||||| || ||||| || ||||| || ||||||||| Sbjct 714653 TCGAGCGTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCATC 714606 >seq31 Length=11202321 Score = 84.2 bits (92), Expect = 1e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288 ||| | || |||| ||||||||| || || ||||| ||||||||||| ||| | || | Sbjct 8040980 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCC 8041039 Query 34289 TCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACC 34348 || || || ||||| ||| | || | || | || | | || || |||| Sbjct 8041040 TCTTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGG 8041099 Query 34349 GTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| |||||||| || || ||||| ||||||||||| Sbjct 8041100 GTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8041140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322950250417760