Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq6 113 3e-20
seq70 95.1 8e-15
seq3 93.3 3e-14
seq309 91.5 1e-13
seq31 84.2 1e-11
>seq6
Length=12818899
Score = 113 bits (124), Expect = 3e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | ||| |||||||| ||||||||||| ||||| ||| | ||
Sbjct 2580487 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 2580428
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| |||||||||||| || || |||| ||||||||| ||| | | ||| |||||
Sbjct 2580427 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCC 2580368
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
|||||| ||| | || | || | || | | ||||| || | ||||||||
Sbjct 2580367 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTC 2580308
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || || | |||||||| |||||||||||
Sbjct 2580307 TTACCAGTTAAGGTTTTCACGAAGATCTGCAT 2580276
>seq70
Length=7483708
Score = 95.1 bits (104), Expect = 8e-15
Identities = 155/221 (70%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 34170 GCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACA-GCTGA 34228
|||| | |||||||||||| || || |||||||| ||||| || || |||| | |||
Sbjct 5585699 GCAGGCGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTTTAATCTGACAGGGTGA 5585758
Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288
|| || |||| ||| ||||| || || || ||| ||||||||| || | |
Sbjct 5585759 -GGCGATCCTCCAGCTGTTTGCCAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCT 5585817
Query 34289 TCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACC 34348
|||||||| ||||| ||| | || | || | || | | ||||| || |
Sbjct 5585818 TCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGA 5585877
Query 34349 GTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||||||| ||||| || || || |||||||||||||||||
Sbjct 5585878 GTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 5585918
>seq3
Length=5748141
Score = 93.3 bits (102), Expect = 3e-14
Identities = 154/221 (70%), Gaps = 1/221 (0%)
Strand=Plus/Plus
Query 34170 GCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGAC 34229
|||| | |||||||||||| | || |||||||| ||||||||||| ||||| |
Sbjct 3927303 GCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGC 3927362
Query 34230 GGTCGTCGTCCAACTGCTTGCCTGCGAA-AATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288
|| | || ||| |||||||| || || || |||| ||||||||| || | ||
Sbjct 3927363 GGCCATCACCCAGCTGCTTGCTGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCT 3927422
Query 34289 TCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACC 34348
||||| || ||||| ||| | || | || | || | | ||||| || |
Sbjct 3927423 TCCTTATCTTGGATCTTGACCTTGACATTCTCGATGGTGTCACTAGGCTCGACCTCTAGA 3927482
Query 34349 GTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||||| | ||||| || || || |||||||||||||||||
Sbjct 3927483 GTGATGTTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 3927523
>seq309
Length=1536079
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || |||| ||| || || | || || || || || ||||| || |||
Sbjct 714833 CCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATATTGTATTCAGAC 714774
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| |||| | || |||| |||||| || ||||| || |||| |||||| || ||
Sbjct 714773 AAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCAGGAGGA 714714
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||| || ||||| ||||| || |||||| || | | ||| ||
Sbjct 714713 ATACCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTGTCCGAGGGTTCAACC 714654
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| | |||||||||||| || ||||| || ||||| || |||||||||
Sbjct 714653 TCGAGCGTGATGGTTTTCCCCGTGAGGGTCTTCACGAAAATCTGCATC 714606
>seq31
Length=11202321
Score = 84.2 bits (92), Expect = 1e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288
||| | || |||| ||||||||| || || ||||| ||||||||||| ||| | || |
Sbjct 8040980 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCC 8041039
Query 34289 TCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACC 34348
|| || || ||||| ||| | || | || | || | | || || ||||
Sbjct 8041040 TCTTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGG 8041099
Query 34349 GTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||||||| |||||||| || || ||||| |||||||||||
Sbjct 8041100 GTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8041140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322950250417760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |