Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1345 194 2e-44 seq498 147 2e-30 seq184 109 5e-19 seq78 91.5 1e-13 >seq1345 Length=786133 Score = 194 bits (214), Expect = 2e-44 Identities = 310/441 (70%), Gaps = 12/441 (3%) Strand=Plus/Minus Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||| || || | ||| ||| |||||||| ||||| |||| ||||| |||||||||||| Sbjct 221205 TTGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTC 221146 Query 16006 CATAAAATCAAAAGGATTTT-----TTGAACAATAGTATTTATCGCATCCCAATTCCAAC 16060 ||| || ||||| | ||||| ||||| ||| | || | | |||| |||| | Sbjct 221145 CATGAAGTCAAATGAATTTTCTACTTTGAA-AATCTTGTTAAAC----CCCAGCTCCAGC 221091 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 | | || ||| |||||||||| || ||||| ||||| | || | |||||| || || Sbjct 221090 ATCAGCCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATA 221031 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 | || ||||| | || || || | || | | ||||| | | || | || ||| Sbjct 221030 AGCTTCACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATT 220971 Query 16181 ATATCTCTTACTACACTATTTA-ACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGC 16239 || | |||||| | || | | || || || | ||| || ||||| | || || Sbjct 220970 ATTTTACTTACT-CTCTGCTCCTATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGC 220912 Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299 ||| |||||||| || || || || || || || | ||| || ||||||||||| || || Sbjct 220911 AAAGTCACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGG 220852 Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359 ||| ||||| || || || | ||| ||||| | ||||| |||||||||||||| || || Sbjct 220851 CATAAGTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCC 220792 Query 16360 TTCAACTGCGGCAAATGCAAC 16380 ||| || |||||||| || || Sbjct 220791 TTCCACGGCGGCAAAGGCCAC 220771 >seq498 Length=2542268 Score = 147 bits (162), Expect = 2e-30 Identities = 473/726 (65%), Gaps = 36/726 (5%) Strand=Plus/Plus Query 15960 CTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAG 16019 ||| ||| |||||||| | || |||||||||| ||||||||||||||| || | ||| | Sbjct 2186384 CTCGCTTCTCAAAGAAGCTGGTCTTTCCTTCTAGTGAAATATTTTCCATGAAGTGAAATG 2186443 Query 16020 GATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAA 16079 |||| | | || ||| | | ||| || | || || ||||||| Sbjct 2186444 GATTCTCT--AC-------TTT---GAA----AAT--CAGC------CTGTCTGCCACAA 2186479 Query 16080 ATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTT 16139 | || || ||||| ||||| | | |||||||| || || | || ||||| | || | Sbjct 2186480 ACTCGATGTACTGCTTCATCAGAGTGCAGTTCATCCCGATGAGCTTCACAGGCAAGGCCT 2186539 Query 16140 CTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTAT 16199 | || | || || | ||||| | || || | | ||||| ||| |||| | || Sbjct 2186540 CCGTAAGGAACTTCTGCTCTATCCTCACTGCGTTGACAATTATTTCTTTTACC-CTCTGC 2186598 Query 16200 TTA-ACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCT 16258 | | || || || | ||| || ||||| | || ||||| ||||| || || || Sbjct 2186599 TCCGATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCC 2186658 Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | ||| || ||||||||||| || ||||| ||||| | || || Sbjct 2186659 TCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCAGTCCCTGCTTCTTG 2186718 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | | || ||||| ||||| || ||||| || |||||||| || Sbjct 2186719 AGCCAGAATATTGATGTGAAAGAACC---GAAGAAGATGCCTTCCACGGCGGCAAAGGCG 2186775 Query 16379 ACCAATCGCTCACCGTACGT--TCTAtttttactttctatccattttttagcccaatttg 16436 || | || || | ||| || || ||| | | ||||| ||||| | | Sbjct 2186776 ACAACACGTTCTCTGTATGTAGCCTCTTTGTCC--CAAATCCAACGCAAGGCCCAGTCGG 2186833 Query 16437 ctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGC 16496 | || | || ||| | ||| | ||||| ||| | || | ||| | | || || Sbjct 2186834 CCTTCTTCTTCACAGAAGGCATCGTTTCTATAGCAATGAAGAGATACTCCCTCTCCTTAG 2186893 Query 16497 TATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTG 16556 |||| ||| || || || || || | ||| |||||||| ||||| || || ||||| | Sbjct 2186894 AATCTTTAATGTAGGTGTCAATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGG 2186953 Query 16557 CTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTT 16616 | || || || ||||| || || | || || | | ||| ||||| | ||| | | Sbjct 2186954 CAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAACTTCTTGGCTAAATCGCT 2187013 Query 16617 CTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAA 16676 | ||||| || || ||||| | || || ||||| || || ||| | | ||| | Sbjct 2187014 ---CCAAGTTCTCATTGACTATGCTGTCACTCGCTGCGAAGAAAGCACGAACGTGAGGTA 2187070 Query 16677 TAAAAT 16682 |||||| Sbjct 2187071 TAAAAT 2187076 >seq184 Length=3314118 Score = 109 bits (120), Expect = 5e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 15884 CTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATT 15943 ||||||||||| ||| | | || ||||||||| | | | | ||| |||| | Sbjct 1986821 CTTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCCGCCATGACTGCAAAG 1986880 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| ||| ||||| || ||||||||||||||||| |||||||||||||| ||| Sbjct 1986881 CGCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTT 1986940 Query 16004 TCCATAAAATCAAAAGGATTTTTTG 16028 |||||||||||||| ||||||| || Sbjct 1986941 TCCATAAAATCAAAGGGATTTTCTG 1986965 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/92 (80%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 16487 ttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546 ||||||||| ||| || |||||||||||||||||||| ||||| |||||||||| | Sbjct 1999340 TTTTCTTTGGG-TCTCTGATGTAAGTATCTATTAGTAAACTGTACATCTCTGAATGAACA 1999398 Query 16547 TTCTCCATTGCTATCTGAAAACCATAAAAGCA 16578 ||||| || |||||||| ||||| || || Sbjct 1999399 TTCTCGATGAGAATCTGAAAGCCATAGAAACA 1999430 >seq78 Length=6419775 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||| |||||| ||| | | ||| ||| ||| || | | ||||| || ||| | Sbjct 5583567 TTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTGTTGAACTCGACATCACCCCCATCCT 5583626 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 || ||||| | |||| ||| |||||||| ||||| |||||||||| |||||||||||| Sbjct 5583627 CTGGTATTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTTC 5583686 Query 16006 CATAAAATCAAAAGGATT 16023 ||| || ||||| ||||| Sbjct 5583687 CATGAAGTCAAATGGATT 5583704 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | ||| || ||||||||||| || ||||| ||||| || || || Sbjct 5585563 TCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATCAGTCCCCGCTTCTTG 5585622 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | || || |||||||| ||||| || ||||| || ||||| || || Sbjct 5585623 AGCCAGAATATGGATGCGAAAGAACCAGAGAAGAAGATGCCTTCCACGGCGGCGAAGGCC 5585682 Query 16379 AC 16380 || Sbjct 5585683 AC 5585684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462333233330600