Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq117 1153 0.0 seq966 134 1e-26 seq26 113 3e-20 >seq117 Length=7007768 Score = 1153 bits (1278), Expect = 0.0 Identities = 1045/1313 (80%), Gaps = 2/1313 (0%) Strand=Plus/Plus Query 107333 GAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGT 107392 || |||||| || || | ||||| ||||| ||||||||||||| ||||||||||| || Sbjct 1426901 GAGGAAGCTCTGTTGGCGTTATCATGTGTGGACCCTGGGCTGCTACATGCTGCTGGCTGT 1426960 Query 107393 TGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTC 107452 ||| | |||| ||| |||||||| | | |||||| | ||| | |||||||||| || Sbjct 1426961 CGTTGCCCTGAAACTGTCCCTCAGACTGAGATGTGACTTCGATGTCATGGATCTGGACTC 1427020 Query 107453 CAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGC 107512 | ||| || | || | |||||| ||||| | ||||||| | ||||||||||||||| Sbjct 1427021 GAAGGAATTTCGAAGCCGGCACTGCAGGGATTTCCTGTACAAGACCCTGAAGCTGCCAGC 1427080 Query 107513 AAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGC 107572 ||| || ||| |||||||||| ||| |||| |||||||| || ||||||||| ||||||| Sbjct 1427081 AAACAGGTCCGTCAACTGTTCCGGGGTCACCCGAGGGGAACATGAAGCAGTGATCCAGGC 1427140 Query 107573 CCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCT 107632 || || | |||||||| ||||| || || || ||||| | | | ||||| Sbjct 1427141 ACTGCTGAATAACCTGGAGACTAAGAAGAATCGACAACCCCTCACAGAGGCTGACTACCT 1427200 Query 107633 CAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACT 107692 | ||| || ||||||||| | |||||| | ||||||| |||||||||||||| || Sbjct 1427201 TAGCATGACAGCAGACTGTGAACAATTCAAGACTAAAAGGAAATTCATACAGTTCCCGCT 1427260 Query 107693 GAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGA 107752 ||| ||||||||| | |||||||||||||| || || |||||||| |||||||||||||| Sbjct 1427261 GAGCAAAGAAGAGGTCGACTTCCCCATTGCGTATTCCATGGTGGTTCATGAGAAGATTGA 1427320 Query 107753 AAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGT 107812 ||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| || Sbjct 1427321 GAACTTTGAAAGGCTGCTGCGAGCTGTGTACACCCCTCAGAACATATACTGTGTCCATGT 1427380 Query 107813 GGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCC 107872 ||| |||||||||||| |||||||| |||| |||| ||||||| || |||||||| Sbjct 1427381 GGACCAGAAGTCCCCAGATACTTTCAAGCAGGCAGTCAGGGCCATTGCATCATGCTTCCC 1427440 Query 107873 CAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCA 107932 ||||||||||| || |||||| |||| | ||||| ||||| ||||||||||| ||||| Sbjct 1427441 AAATGTCTTCATAGCTAGTAAGCTGGTGTCAGTGGTCTATGCTTCCTGGTCCAGGGTGCA 1427500 Query 107933 AGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACT 107992 |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| | || Sbjct 1427501 GGCTGACCTGAACTGCATGGAAGACTTGCTCCAGAGCTCTGTGCCATGGAAATACCTCCT 1427560 Query 107993 GAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAA 108052 ||| || || ||||||||||| ||||| ||||||||||| |||||||||| ||||||||| Sbjct 1427561 GAACACCTGTGGGACAGACTTTCCCATCAAGACCAATGCTGAGATGGTCCAGGCCCTCAA 1427620 Query 108053 GATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCG 108112 | | ||||| || ||||||| |||||||| |||||||| ||| ||||| || Sbjct 1427621 GCTATTGAATGGGCAGAACAGCATGGAGTCAGAGGTACCCCCTGCACACAAAACGTCCCG 1427680 Query 108113 CTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCC 108172 ||||| ||| | |||||||||| ||||||| || || |||||| ||| |||| ||| Sbjct 1427681 CTGGAGATATCATTATGAGGTGAGAGACACATTGCACATAACCAGCGAGAAGAAGACCCC 1427740 Query 108173 TCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTT 108232 ||| ||| | || || |||||||||| ||||||||||| | |||||||||||| ||| Sbjct 1427741 TCCACCTAACAACATAACCATGTTCACGGGGAATGCCTACATGGTGGCCTCTCGAAACTT 1427800 Query 108233 TGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACAC 108292 | ||||||| ||| |||| | ||| ||||| ||| | |||||||| |||||||| Sbjct 1427801 CATTGAACATGTATTAAGCAACTCCAAAGCCCAACAACTAATCGAATGGGTAAAAGACAC 1427860 Query 108293 CTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTC 108352 |||||| || || || ||||| ||||||||||| |||||||| | ||||||||||| || Sbjct 1427861 CTATAGTCCTGATGAGCACCTTTGGGCCACCCTCCAGCGTGCCTCATGGATGCCTGGATC 1427920 Query 108353 TGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAA 108412 | ||| |||||||| | | || |||||||||||| | || || ||||| ||| Sbjct 1427921 GGCTCCCTTGCACCCCAAATTTGACCTCTCAGACATGAGATCTATTGCAAGGCTAACCAA 1427980 Query 108413 GTGGCAGTACCACGAGGGAGA-TGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAA 108471 ||||||| ||| |||||||| | ||| | ||||||||||| | || ||||| |||| Sbjct 1427981 GTGGCAGGGCCATGAGGGAGACATTGAGCGT-GGGGCGCCTTACACCCCTTGCTCAGGAA 1428039 Query 108472 TCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACC 108531 |||| | | |||| |||| ||||| ||| | ||||||||| ||||||| || ||||||| Sbjct 1428040 TCCACCAGCGGGCTGTCTGTATTTATGGGTCTGGGGACCTGCACTGGATCCTTCAGAACC 1428099 Query 108532 ATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAG 108591 ||||||||||||| |||||||||||||| | |||||||||||| || || ||||| |||| Sbjct 1428100 ATCACCTCTTGGCCAACAAGTTTGACCCAAAGGTGGATGATAATGTTCTTCAGTGTTTAG 1428159 Query 108592 AAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAGCTGCACTG 108644 |||| || ||||||| || |||||||| ||||||||||| |||| ||||| Sbjct 1428160 AAGAATATTTACGTCACAAAGCCATCTACGGGACTGAACTGTGAGACACACTG 1428212 >seq966 Length=1419223 Score = 134 bits (148), Expect = 1e-26 Identities = 569/884 (64%), Gaps = 25/884 (3%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| | | ||| || ||||| || || || ||||| ||| | ||| Sbjct 876613 CCCCTTAGTAAAGAAGAGGTCGGCTTTCCAATTGCATATTCCATAGTGGTTCATCACAAG 876672 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | ||| |||||||| | ||||| | Sbjct 876673 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATT 876732 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || ||||| || | || | || || || || || |||| |||||| Sbjct 876733 CATGTGGACAAAAAAGCAGAGGAATCCTTTTTAGCCGCAGTGGTGGGCATTGCATCCTGC 876792 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| ||||||| |||||| || |||||||| |||||| | Sbjct 876793 TTTGGTAATGTCTTTGTGGCCAGCCAGTTGGAGAATGTTGTTTATGCATCCTGGAGTCGG 876852 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| |||||||| ||||||||| | ||| || | |||| | ||||| | ||||||| Sbjct 876853 GTGCAGGCTGACCTCAACTGTATGAAGGACCTG-TACAGAA-TGAGTGCAAACTGGAAGT 876910 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| || || | || ||||| || || ||||| || || ||| | Sbjct 876911 ACTTGATCAATCTTTGTGGTATGGATTTCCCTATTAAAACCAACCTAGAAATTGTCAGGA 876970 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaa 108105 |||||| || ||| | |||| |||| ||||| || || ||| Sbjct 876971 AGCTCAAGTCATTCTCAGGTGAAAACAACCTGGAAACTGAGAAGATGCCTCAGAACAAGG 877030 Query 108106 aaaaTCGCTGGAAATACCGCTATGAGGTGACAGAC---ACACTGT---ACCCTACCAGCA 108159 || | | |||||| | | || | || ||| | |||| || || | Sbjct 877031 AAGAAAGGTGGAAAAAAAGATACGCCGTTGTTGACGGGAAGCTGTCAAACACTGG--GGT 877088 Query 108160 AGATGAAGGACCCTCCCC-CTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTG 108218 || ||| || | || || | || | || | || |||| | |||||| || || Sbjct 877089 AGCCAAAGCGCCACCTCCACTCAAAACT--CCTCTCTTTTCAGGCAGTGCCTACTTCGTA 877146 Query 108219 GCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGACTGGTTGA 108277 | | | | | | ||| |||| |||| || || |||| ||| | | || Sbjct 877147 GTCAGTAGGGAGTATGTAGGCTATGTGCTAGAAAATGAAAATATCCGGAAGT-TCATGGA 877205 Query 108278 ATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCC 108337 |||| | || || || ||||| || || |||||||||||| | ||| | | ||| Sbjct 877206 GTGGGCACAGGATACATACAGCCCAGATGAGTACCTCTGGGCCAGTATCCAGAG-GATCC 877264 Query 108338 GTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATGACTG 108393 || | | ||||| ||| | || ||||| |||||| || | || ||||||| || Sbjct 877265 CTGAAGTCCCTGGTTCTCTCCCCTCGAGCCAT---AAGTATGACTTGTCTGACATGAATG 877321 Query 108394 CCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTT 108453 || |||| ||| | ||||||||||||||| || || || || || || || |||| Sbjct 877322 CCGTCGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACGTTTCCAAAGGCGCTCCTT 877381 Query 108454 ATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGT 108513 | |||| ||| ||| |||| | | || | || ||| ||| | || |||||| Sbjct 877382 ACCCACCGTGCAGCGGAGTCCACGTGCGCTCCGTGTGTGTTTTCGGAGTTGGCGACCTGA 877441 Query 108514 ACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 |||||| || || | || ||||| || || |||||||||||| Sbjct 877442 GCTGGATGCTTCACCAACACCACCTTTTCGCCAACAAGTTTGAC 877485 >seq26 Length=11862744 Score = 113 bits (124), Expect = 3e-20 Identities = 180/254 (71%), Gaps = 16/254 (6%) Strand=Plus/Plus Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841 ||||||| ||||||| |||||||| || |||||| |||| | || ||||| ||||||| Sbjct 5126424 ATGCCCC--AGAACATCTACTGTGTGCATGTGGATAGGAAGGCGCCGGAGACCTTCAAAG 5126481 Query 107842 AGGCGGTCAAG--GCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGT 107899 | || ||| || || | || ||| || ||||| | |||| ||||| |||| ||| Sbjct 5126482 ATGCTGTCCAGCAGCTACTAAG--CTGTTTTCCCAACGCCTTCCTGGCCTCTAAGATGGA 5126539 Query 107900 CCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTT 107959 || || || |||| || ||| | | || |||||||||||||| ||| |||| | Sbjct 5126540 ACCTGTAGTCTATGGTGGCTTCTCCCGGCTCCAGGCTGACCTGAACTGCATGAAAGATCT 5126599 Query 107960 G-----CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTC 108014 | |||| ||| || ||||||||||| | || || || |||||| ||||| Sbjct 5126600 GGTGGCCTCC-GAG----GTCCCATGGAAGTATGTTCTCAACACCTGCGGGCAGGACTTT 5126654 Query 108015 CCCATAAAGACCAA 108028 ||| | || ||||| Sbjct 5126655 CCCCTGAAAACCAA 5126668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348137555011554