Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq117 1153 0.0
seq966 134 1e-26
seq26 113 3e-20
>seq117
Length=7007768
Score = 1153 bits (1278), Expect = 0.0
Identities = 1045/1313 (80%), Gaps = 2/1313 (0%)
Strand=Plus/Plus
Query 107333 GAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGT 107392
|| |||||| || || | ||||| ||||| ||||||||||||| ||||||||||| ||
Sbjct 1426901 GAGGAAGCTCTGTTGGCGTTATCATGTGTGGACCCTGGGCTGCTACATGCTGCTGGCTGT 1426960
Query 107393 TGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTC 107452
||| | |||| ||| |||||||| | | |||||| | ||| | |||||||||| ||
Sbjct 1426961 CGTTGCCCTGAAACTGTCCCTCAGACTGAGATGTGACTTCGATGTCATGGATCTGGACTC 1427020
Query 107453 CAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGC 107512
| ||| || | || | |||||| ||||| | ||||||| | |||||||||||||||
Sbjct 1427021 GAAGGAATTTCGAAGCCGGCACTGCAGGGATTTCCTGTACAAGACCCTGAAGCTGCCAGC 1427080
Query 107513 AAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGC 107572
||| || ||| |||||||||| ||| |||| |||||||| || ||||||||| |||||||
Sbjct 1427081 AAACAGGTCCGTCAACTGTTCCGGGGTCACCCGAGGGGAACATGAAGCAGTGATCCAGGC 1427140
Query 107573 CCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCT 107632
|| || | |||||||| ||||| || || || ||||| | | | |||||
Sbjct 1427141 ACTGCTGAATAACCTGGAGACTAAGAAGAATCGACAACCCCTCACAGAGGCTGACTACCT 1427200
Query 107633 CAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACT 107692
| ||| || ||||||||| | |||||| | ||||||| |||||||||||||| ||
Sbjct 1427201 TAGCATGACAGCAGACTGTGAACAATTCAAGACTAAAAGGAAATTCATACAGTTCCCGCT 1427260
Query 107693 GAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGA 107752
||| ||||||||| | |||||||||||||| || || |||||||| ||||||||||||||
Sbjct 1427261 GAGCAAAGAAGAGGTCGACTTCCCCATTGCGTATTCCATGGTGGTTCATGAGAAGATTGA 1427320
Query 107753 AAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGT 107812
||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 1427321 GAACTTTGAAAGGCTGCTGCGAGCTGTGTACACCCCTCAGAACATATACTGTGTCCATGT 1427380
Query 107813 GGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCC 107872
||| |||||||||||| |||||||| |||| |||| ||||||| || ||||||||
Sbjct 1427381 GGACCAGAAGTCCCCAGATACTTTCAAGCAGGCAGTCAGGGCCATTGCATCATGCTTCCC 1427440
Query 107873 CAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCA 107932
||||||||||| || |||||| |||| | ||||| ||||| ||||||||||| |||||
Sbjct 1427441 AAATGTCTTCATAGCTAGTAAGCTGGTGTCAGTGGTCTATGCTTCCTGGTCCAGGGTGCA 1427500
Query 107933 AGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACT 107992
|||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| | ||
Sbjct 1427501 GGCTGACCTGAACTGCATGGAAGACTTGCTCCAGAGCTCTGTGCCATGGAAATACCTCCT 1427560
Query 107993 GAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAA 108052
||| || || ||||||||||| ||||| ||||||||||| |||||||||| |||||||||
Sbjct 1427561 GAACACCTGTGGGACAGACTTTCCCATCAAGACCAATGCTGAGATGGTCCAGGCCCTCAA 1427620
Query 108053 GATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCG 108112
| | ||||| || ||||||| |||||||| |||||||| ||| ||||| ||
Sbjct 1427621 GCTATTGAATGGGCAGAACAGCATGGAGTCAGAGGTACCCCCTGCACACAAAACGTCCCG 1427680
Query 108113 CTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCC 108172
||||| ||| | |||||||||| ||||||| || || |||||| ||| |||| |||
Sbjct 1427681 CTGGAGATATCATTATGAGGTGAGAGACACATTGCACATAACCAGCGAGAAGAAGACCCC 1427740
Query 108173 TCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTT 108232
||| ||| | || || |||||||||| ||||||||||| | |||||||||||| |||
Sbjct 1427741 TCCACCTAACAACATAACCATGTTCACGGGGAATGCCTACATGGTGGCCTCTCGAAACTT 1427800
Query 108233 TGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACAC 108292
| ||||||| ||| |||| | ||| ||||| ||| | |||||||| ||||||||
Sbjct 1427801 CATTGAACATGTATTAAGCAACTCCAAAGCCCAACAACTAATCGAATGGGTAAAAGACAC 1427860
Query 108293 CTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTC 108352
|||||| || || || ||||| ||||||||||| |||||||| | ||||||||||| ||
Sbjct 1427861 CTATAGTCCTGATGAGCACCTTTGGGCCACCCTCCAGCGTGCCTCATGGATGCCTGGATC 1427920
Query 108353 TGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAA 108412
| ||| |||||||| | | || |||||||||||| | || || ||||| |||
Sbjct 1427921 GGCTCCCTTGCACCCCAAATTTGACCTCTCAGACATGAGATCTATTGCAAGGCTAACCAA 1427980
Query 108413 GTGGCAGTACCACGAGGGAGA-TGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAA 108471
||||||| ||| |||||||| | ||| | ||||||||||| | || ||||| ||||
Sbjct 1427981 GTGGCAGGGCCATGAGGGAGACATTGAGCGT-GGGGCGCCTTACACCCCTTGCTCAGGAA 1428039
Query 108472 TCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACC 108531
|||| | | |||| |||| ||||| ||| | ||||||||| ||||||| || |||||||
Sbjct 1428040 TCCACCAGCGGGCTGTCTGTATTTATGGGTCTGGGGACCTGCACTGGATCCTTCAGAACC 1428099
Query 108532 ATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAG 108591
||||||||||||| |||||||||||||| | |||||||||||| || || ||||| ||||
Sbjct 1428100 ATCACCTCTTGGCCAACAAGTTTGACCCAAAGGTGGATGATAATGTTCTTCAGTGTTTAG 1428159
Query 108592 AAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAGCTGCACTG 108644
|||| || ||||||| || |||||||| ||||||||||| |||| |||||
Sbjct 1428160 AAGAATATTTACGTCACAAAGCCATCTACGGGACTGAACTGTGAGACACACTG 1428212
>seq966
Length=1419223
Score = 134 bits (148), Expect = 1e-26
Identities = 569/884 (64%), Gaps = 25/884 (3%)
Strand=Plus/Plus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| || |||||||||||| | | ||| || ||||| || || || ||||| ||| | |||
Sbjct 876613 CCCCTTAGTAAAGAAGAGGTCGGCTTTCCAATTGCATATTCCATAGTGGTTCATCACAAG 876672
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
||||||| |||| |||| ||| | ||| | ||| |||||||| | ||||| |
Sbjct 876673 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATT 876732
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|| ||||| || | || | || || || || || |||| ||||||
Sbjct 876733 CATGTGGACAAAAAAGCAGAGGAATCCTTTTTAGCCGCAGTGGTGGGCATTGCATCCTGC 876792
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
|| |||||||| ||||||| |||||| || |||||||| |||||| |
Sbjct 876793 TTTGGTAATGTCTTTGTGGCCAGCCAGTTGGAGAATGTTGTTTATGCATCCTGGAGTCGG 876852
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985
||||| |||||||| ||||||||| | ||| || | |||| | ||||| | |||||||
Sbjct 876853 GTGCAGGCTGACCTCAACTGTATGAAGGACCTG-TACAGAA-TGAGTGCAAACTGGAAGT 876910
Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045
|||| | ||| || || | || ||||| || || ||||| || || ||| |
Sbjct 876911 ACTTGATCAATCTTTGTGGTATGGATTTCCCTATTAAAACCAACCTAGAAATTGTCAGGA 876970
Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaa 108105
|||||| || ||| | |||| |||| ||||| || || |||
Sbjct 876971 AGCTCAAGTCATTCTCAGGTGAAAACAACCTGGAAACTGAGAAGATGCCTCAGAACAAGG 877030
Query 108106 aaaaTCGCTGGAAATACCGCTATGAGGTGACAGAC---ACACTGT---ACCCTACCAGCA 108159
|| | | |||||| | | || | || ||| | |||| || || |
Sbjct 877031 AAGAAAGGTGGAAAAAAAGATACGCCGTTGTTGACGGGAAGCTGTCAAACACTGG--GGT 877088
Query 108160 AGATGAAGGACCCTCCCC-CTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTG 108218
|| ||| || | || || | || | || | || |||| | |||||| || ||
Sbjct 877089 AGCCAAAGCGCCACCTCCACTCAAAACT--CCTCTCTTTTCAGGCAGTGCCTACTTCGTA 877146
Query 108219 GCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGACTGGTTGA 108277
| | | | | | ||| |||| |||| || || |||| ||| | | ||
Sbjct 877147 GTCAGTAGGGAGTATGTAGGCTATGTGCTAGAAAATGAAAATATCCGGAAGT-TCATGGA 877205
Query 108278 ATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCC 108337
|||| | || || || ||||| || || |||||||||||| | ||| | | |||
Sbjct 877206 GTGGGCACAGGATACATACAGCCCAGATGAGTACCTCTGGGCCAGTATCCAGAG-GATCC 877264
Query 108338 GTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATGACTG 108393
|| | | ||||| ||| | || ||||| |||||| || | || ||||||| ||
Sbjct 877265 CTGAAGTCCCTGGTTCTCTCCCCTCGAGCCAT---AAGTATGACTTGTCTGACATGAATG 877321
Query 108394 CCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTT 108453
|| |||| ||| | ||||||||||||||| || || || || || || || ||||
Sbjct 877322 CCGTCGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACGTTTCCAAAGGCGCTCCTT 877381
Query 108454 ATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGT 108513
| |||| ||| ||| |||| | | || | || ||| ||| | || ||||||
Sbjct 877382 ACCCACCGTGCAGCGGAGTCCACGTGCGCTCCGTGTGTGTTTTCGGAGTTGGCGACCTGA 877441
Query 108514 ACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
|||||| || || | || ||||| || || ||||||||||||
Sbjct 877442 GCTGGATGCTTCACCAACACCACCTTTTCGCCAACAAGTTTGAC 877485
>seq26
Length=11862744
Score = 113 bits (124), Expect = 3e-20
Identities = 180/254 (71%), Gaps = 16/254 (6%)
Strand=Plus/Plus
Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841
||||||| ||||||| |||||||| || |||||| |||| | || ||||| |||||||
Sbjct 5126424 ATGCCCC--AGAACATCTACTGTGTGCATGTGGATAGGAAGGCGCCGGAGACCTTCAAAG 5126481
Query 107842 AGGCGGTCAAG--GCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGT 107899
| || ||| || || | || ||| || ||||| | |||| ||||| |||| |||
Sbjct 5126482 ATGCTGTCCAGCAGCTACTAAG--CTGTTTTCCCAACGCCTTCCTGGCCTCTAAGATGGA 5126539
Query 107900 CCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTT 107959
|| || || |||| || ||| | | || |||||||||||||| ||| |||| |
Sbjct 5126540 ACCTGTAGTCTATGGTGGCTTCTCCCGGCTCCAGGCTGACCTGAACTGCATGAAAGATCT 5126599
Query 107960 G-----CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTC 108014
| |||| ||| || ||||||||||| | || || || |||||| |||||
Sbjct 5126600 GGTGGCCTCC-GAG----GTCCCATGGAAGTATGTTCTCAACACCTGCGGGCAGGACTTT 5126654
Query 108015 CCCATAAAGACCAA 108028
||| | || |||||
Sbjct 5126655 CCCCTGAAAACCAA 5126668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348137555011554
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