Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq25 107 2e-18
>seq25
Length=8104077
Score = 107 bits (118), Expect = 2e-18
Identities = 277/420 (66%), Gaps = 9/420 (2%)
Strand=Plus/Plus
Query 20326 ATTAATTTAATTAA-AACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGC 20384
||||||| |||||| || ||||| | ||||||||||| || || || |||||||| |
Sbjct 5743098 ATTAATT-AATTAATAAACAACCCTTATGACAGAAGAATCATCTTGTGTGCCTGGAAGCC 5743156
Query 20385 TAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGC 20444
|||||| | || | |||| ||||||| ||| ||| | ||| || || |
Sbjct 5743157 AAAAGATCTTCCCATGCTGGCACTGCCTCC-------TTGCCATGTCCATTCTATGTAGT 5743209
Query 20445 TAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCC 20504
||| || |||| |||| | || ||| | || | || |||| |||||||| ||
Sbjct 5743210 GAATGGAGAGCTGTCTTGTCCCTTTTAGCAAAGGTCAGGAGACGTGGGCCTGGGTGTGCC 5743269
Query 20505 TTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564
||||| ||| | || |||| ||| | | || ||||||| || | | ||||
Sbjct 5743270 CTTCAACATTACCAGCCATGCCCTGTTCATCTACGTGATTGCCCACACCATGGGACTAAA 5743329
Query 20565 AACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACC 20624
| ||||| || || || || | ||||| || |||||| ||| || ||||| | ||
Sbjct 5743330 GCCAGGTGATTTTGTTCATACTTTGGGAGATGCACATATTCACCCGAACCATATCCAGCC 5743389
Query 20625 TTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAAC 20684
| | ||| | ||| | || || | |||| | | || ||| || || | |||
Sbjct 5743390 TCTGAAAATTCAGCTTCCATGAGAGCCAAGATATCTCACAAAGCTCAAAATGCTTTGAAA 5743449
Query 20685 TGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCA 20744
||| | ||| | ||||| |||| ||| || ||| | |||||||||||||||||
Sbjct 5743450 AGTTGAGACAATTGATGATTTCAAAGTTGAAGACTTTCAGACTGAAGGTTATAATCCCCA 5743509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399033567634345
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |