Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq25 107 2e-18 >seq25 Length=8104077 Score = 107 bits (118), Expect = 2e-18 Identities = 277/420 (66%), Gaps = 9/420 (2%) Strand=Plus/Plus Query 20326 ATTAATTTAATTAA-AACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGC 20384 ||||||| |||||| || ||||| | ||||||||||| || || || |||||||| | Sbjct 5743098 ATTAATT-AATTAATAAACAACCCTTATGACAGAAGAATCATCTTGTGTGCCTGGAAGCC 5743156 Query 20385 TAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGC 20444 |||||| | || | |||| ||||||| ||| ||| | ||| || || | Sbjct 5743157 AAAAGATCTTCCCATGCTGGCACTGCCTCC-------TTGCCATGTCCATTCTATGTAGT 5743209 Query 20445 TAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCC 20504 ||| || |||| |||| | || ||| | || | || |||| |||||||| || Sbjct 5743210 GAATGGAGAGCTGTCTTGTCCCTTTTAGCAAAGGTCAGGAGACGTGGGCCTGGGTGTGCC 5743269 Query 20505 TTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564 ||||| ||| | || |||| ||| | | || ||||||| || | | |||| Sbjct 5743270 CTTCAACATTACCAGCCATGCCCTGTTCATCTACGTGATTGCCCACACCATGGGACTAAA 5743329 Query 20565 AACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACC 20624 | ||||| || || || || | ||||| || |||||| ||| || ||||| | || Sbjct 5743330 GCCAGGTGATTTTGTTCATACTTTGGGAGATGCACATATTCACCCGAACCATATCCAGCC 5743389 Query 20625 TTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAAC 20684 | | ||| | ||| | || || | |||| | | || ||| || || | ||| Sbjct 5743390 TCTGAAAATTCAGCTTCCATGAGAGCCAAGATATCTCACAAAGCTCAAAATGCTTTGAAA 5743449 Query 20685 TGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCA 20744 ||| | ||| | ||||| |||| ||| || ||| | ||||||||||||||||| Sbjct 5743450 AGTTGAGACAATTGATGATTTCAAAGTTGAAGACTTTCAGACTGAAGGTTATAATCCCCA 5743509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399033567634345