Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq70 98.7 8e-16 seq6 98.7 8e-16 seq3 98.7 8e-16 >seq70 Length=7483708 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGAT-CG-TCGT 45185 |||| ||||| ||| ||| ||||| ||||| || || ||| || || || || | Sbjct 5585710 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTTTAATCTGACAG--GGTGAGGCGATCCT 5585767 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 |||| ||||| || || ||||||| | ||| ||||| || || | | |||||||| Sbjct 5585768 CCAGCTGTTTGCCAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCTTCCTTGTCTT 5585827 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 || || ||| || | | | | |||| | | ||| ||||| | || || |||| Sbjct 5585828 GGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGAGTGATGGTCT 5585887 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||||| |||||||||||||| ||||||||| Sbjct 5585888 TGCCCGTCAGGGTCTTCACAAAGATCTGCATGTTG 5585922 >seq6 Length=12818899 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||| ||||| ||||||||||| ||| ||| | || ||| Sbjct 2580484 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 2580425 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| ||||| || || | |||||| |||||| Sbjct 2580424 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCCTGG 2580365 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | |||| | ||| ||||| | ||| || ||||| Sbjct 2580364 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTCTTA 2580305 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || | || ||||| ||||| ||||| Sbjct 2580304 CCAGTTAAGGTTTTCACGAAGATCTGCAT 2580276 >seq3 Length=5748141 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||| ||||| ||||||||||| ||| ||| | || || Sbjct 3927314 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCACCC 3927373 Query 45188 AGTTGTTTTCCGGCGAAT-ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || || | ||| ||| |||| || ||| ||||| || || | || ||||| || Sbjct 3927374 AGCTGCTTGCTGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTATCTTG 3927433 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| || | | | | |||| | | ||| ||||| | || || |||| Sbjct 3927434 GATCTTGACCTTGACATTCTCGATGGTGTCACTAGGCTCGACCTCTAGAGTGATGTTCTT 3927493 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| ||||| |||||||||||||| ||||||||| Sbjct 3927494 GCCTGTCAGGGTCTTCACAAAGATCTGCATGTTG 3927527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394926316034341