Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq70 98.7 8e-16
seq6 98.7 8e-16
seq3 98.7 8e-16
>seq70
Length=7483708
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGAT-CG-TCGT 45185
|||| ||||| ||| ||| ||||| ||||| || || ||| || || || || |
Sbjct 5585710 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTTTAATCTGACAG--GGTGAGGCGATCCT 5585767
Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245
|||| ||||| || || ||||||| | ||| ||||| || || | | ||||||||
Sbjct 5585768 CCAGCTGTTTGCCAGCAAATATCAGCTTCTGCTGGTCTGGTGGGATGTCTTCCTTGTCTT 5585827
Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305
|| || ||| || | | | | |||| | | ||| ||||| | || || ||||
Sbjct 5585828 GGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGAGTGATGGTCT 5585887
Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
|||||||||| |||||||||||||| |||||||||
Sbjct 5585888 TGCCCGTCAGGGTCTTCACAAAGATCTGCATGTTG 5585922
>seq6
Length=12818899
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| |||||| ||| ||| ||||| ||||||||||| ||| ||| | || |||
Sbjct 2580484 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 2580425
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || |||| || ||| ||||| || || | |||||| ||||||
Sbjct 2580424 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCTTTGTCCTGG 2580365
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| ||| ||| || | | | | |||| | ||| ||||| | ||| || |||||
Sbjct 2580364 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTCTTA 2580305
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || | || ||||| ||||| |||||
Sbjct 2580304 CCAGTTAAGGTTTTCACGAAGATCTGCAT 2580276
>seq3
Length=5748141
Score = 98.7 bits (108), Expect = 8e-16
Identities = 151/214 (71%), Gaps = 1/214 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| |||||| ||| ||| ||||| ||||||||||| ||| ||| | || ||
Sbjct 3927314 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCACCC 3927373
Query 45188 AGTTGTTTTCCGGCGAAT-ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246
|| || || | ||| ||| |||| || ||| ||||| || || | || ||||| ||
Sbjct 3927374 AGCTGCTTGCTGGCAAATTATCAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTATCTTG 3927433
Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
|| || ||| || | | | | |||| | | ||| ||||| | || || ||||
Sbjct 3927434 GATCTTGACCTTGACATTCTCGATGGTGTCACTAGGCTCGACCTCTAGAGTGATGTTCTT 3927493
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
||| ||||| |||||||||||||| |||||||||
Sbjct 3927494 GCCTGTCAGGGTCTTCACAAAGATCTGCATGTTG 3927527
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394926316034341
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |