Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq498 188 7e-43 seq1345 131 2e-25 seq78 86.0 6e-12 seq184 82.4 7e-11 >seq498 Length=2542268 Score = 188 bits (208), Expect = 7e-43 Identities = 310/446 (70%), Gaps = 6/446 (1%) Strand=Plus/Plus Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 14245 || || || || || | || ||||| ||||| || | |||||| ||||| || ||||| Sbjct 2186617 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGC 2186676 Query 14246 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 14305 || || |||||||| | || ||||||| ||| | || || | ||| ||||||| | | Sbjct 2186677 TCATTGGAAAATGTAAGGCCGGGCATCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTG 2186736 Query 14306 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14365 || || ||| ||||| || || || || || ||||| || | | ||||||| | Sbjct 2186737 AAAGAACCG---AAGAAGATGCCTTCCACGGCGGCAAAGGCGACAACACGTTCTCTGTAT 2186793 Query 14366 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14425 | || | ||||| | | ||||| ||||| || | || || || | | || | Sbjct 2186794 GTAGCCTCTTTGTCCCAAATCCAACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGC 2186853 Query 14426 ATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCA 14485 || ||||| |||||| | || | || ||| |||| |||| | | |||||| || ||| Sbjct 2186854 ATCGTTTCTATAGCAATGAAGAGATACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCA 2186913 Query 14486 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAA 14545 ||||| | || ||||||||||| |||||||||||||| || || || || ||||| ||| Sbjct 2186914 ATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAA 2186973 Query 14546 CATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACT 14605 || | || |||| ||| || ||| | ||||| | |||| || ||||| ||| Sbjct 2186974 CAGCGGGCCTCTGTGACTTGAACTTCTTGGCTAAATCGCT---CCAAGTTCTCATTGACT 2187030 Query 14606 ATACCATCACTAGCTGCAAAAAATGC 14631 || | ||||| ||||| || || || Sbjct 2187031 ATGCTGTCACTCGCTGCGAAGAAAGC 2187056 >seq1345 Length=786133 Score = 131 bits (144), Expect = 2e-25 Identities = 296/448 (66%), Gaps = 34/448 (8%) Strand=Plus/Minus Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 14245 || || || || || | || ||||| |||||||| | |||||||||||| || ||||| Sbjct 220934 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAATGTAAGCCCTCATCTCTGCTGATAAGC 220875 Query 14246 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 14305 || || |||||||| | || ||||| | ||| || || || | ||| ||||||| || Sbjct 220874 TCATTGGAAAATGTAAGGCCGGGCATAAGTCCCCGCTTCTTCAGCCAGAATATTGATGCA 220815 Query 14306 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14365 || || || |||||||| || || || || || ||||| || | | | ||||||| | Sbjct 220814 AAAGAACCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGGCCACAACACATTCTCCATAT 220755 Query 14366 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14425 | || ||||| ||| ||| | || || | Sbjct 220754 GTAGCCCCTTTGT------------------CCC---CAG-------TGCAACGCAAGGC 220723 Query 14426 ATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATC 14484 || ||||||||||||| || | || ||| |||| || | | ||| | |||| || Sbjct 220722 ATCTTTTCAATAGCATTGAAGAGATACTCCCTCTCCTTGGAATCTTTA-----ATGTGTC 220668 Query 14485 AATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14544 |||||| | || ||||||||||| ||||| ||||| || | || || || ||||| || Sbjct 220667 AATAAGGAGACTGTACATTTCAGAATGTATATTTTCTATGCCAATTTGGAAGCCATAGAA 220608 Query 14545 ACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAAC 14604 ||| | | |||| ||| || ||| | ||| || |||| || ||||| || Sbjct 220607 ACAGCGGACCTCTGTGACTTGAACTTCTTGGCTGAATAGTTTCACCAAGTTCTCATTGAC 220548 Query 14605 TATACCATCACTAGCTGCAAAAAATGCC 14632 ||| | ||||| |||||||| || ||| Sbjct 220547 TATGCTGTCACTTGCTGCAAAGAAAGCC 220520 >seq78 Length=6419775 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 || |||||| |||| || | |||| ||| || | | || || || ||||| | Sbjct 5583568 TAGAAATCAGCATCCAAGGTAAAAGAATTCTCTGTTGAACTCGACATCACCCCCATCCTC 5583627 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 || ||||| | |||| || ||||||||||| || || ||||| ||||| ||||||||| Sbjct 5583628 TGGTATTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTTCC 5583687 Query 13976 ATAAAATCAAATGGATT 13992 || || ||||||||||| Sbjct 5583688 ATGAAGTCAAATGGATT 5583704 >seq184 Length=3314118 Score = 82.4 bits (90), Expect = 7e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| ||| ||||| ||| |||||||| || ||||| ||||| | ||| || |||||| Sbjct 1986884 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 1986943 Query 13976 ATAAAATCAAATGGATTT 13993 ||||||||||| |||||| Sbjct 1986944 ATAAAATCAAAGGGATTT 1986961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482159167396280