Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq6 82.4 6e-11 >seq6 Length=12818899 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || ||||||||||| || || || || ||| | || ||||| | || Sbjct 2580276 ATGCAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCCTAGAGGTCGAGCCCAGT 2580335 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| |||| ||| || | ||||| || | || ||||||| Sbjct 2580336 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCCCCTGACCAG 2580395 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || | | || | ||| ||||| || ||||||||| | || || || |||| | Sbjct 2580396 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 2580455 Query 25012 ATACAGAAAGAGGCCACGCTTCA 25034 || ||||||||| |||| || || Sbjct 2580456 ATCCAGAAAGAGTCCACTCTGCA 2580478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418146362268320