Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1345 118 9e-22
seq657 116 3e-21
seq31 84.2 2e-11
seq70 82.4 7e-11
>seq1345
Length=786133
Score = 118 bits (130), Expect = 9e-22
Identities = 406/621 (65%), Gaps = 48/621 (8%)
Strand=Plus/Plus
Query 57519 TTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAAC 57578
||| |||| || |||| | |||||||| ||||| || |||| | || || ||| |
Sbjct 220344 TTGGAAGAAAACCCCCACTGCTTTGTCATCTTTCCCATCAAATACCATGATATCTGGCAG 220403
Query 57579 ATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGAT 57638
|||||||| || | || || || |||||||| | || || || ||||| || ||||||
Sbjct 220404 ATGTACAAGAAAGATGAGGCCTCCTTTTGGACGGCTGAGGAGGTGGACCTTTCCAAGGAT 220463
Query 57639 CTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTT--GG 57696
| | ||||| | || ||| ||||||| || |||| | | | |||| ||
Sbjct 220464 ATTCAGTACTGGGAAGCTCTGAAACCCAGTGAGAGACATGTTAT--ACCTCATGTTCGGG 220521
Query 57697 CGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA--CA 57754
| || || || ||| || | || || || ||||| ||||| |||| | |||| ||
Sbjct 220522 CTTTCTTTGCAGCAAGTGACAGCATAGTCAATGAGAACTTGGT-GAAAC-TATTCAGCCA 220579
Query 57755 AGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGT 57814
|||||| ||||| || |||| | || || || || || ||| | | ||| ||||| |
Sbjct 220580 AGAAGTTCAAGTCACAGAGGTCCGCTGTTTCTATGGCTTCCAAATTGGCATAGAAAATAT 220639
Query 57815 GCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CAACGACGAGAAA 57872
||||| |||||||| || || || || || | | ||| ||| || ||| |
Sbjct 220640 ACATTCTGAAATGTACAGTCTCCTTATTGACACAT---TAAAGATTCCAAGGA-GAGGGA 220695
Query 57873 CGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCA 57932
||| || ||||| || || |||| ||||| | || ||
Sbjct 220696 -GTAT-CTCTTCAATGCTATTGAAAAGATGCC-----TTGC---------------GT-- 220731
Query 57933 ATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCC 57992
| | ||| | |||| | || || | | || | | | || || ||||||
Sbjct 220732 -TGCACTGGGGACAAAGGG-----GCTACATATGGAGAATGTGTTGTGGCCTTTGCCGCC 220785
Query 57993 GTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGC 58052
|| ||||| || |||||||| || ||||| ||||||| ||| ||||||| || ||
Sbjct 220786 GTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTGAAGAAGCGGGGA 220845
Query 58053 CTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC-GC-GCGACGAGGGTCTCCATA 58110
|| ||||||||||| || ||| ||| ||| | |||| || | || ||||| | |||
Sbjct 220846 CTTATGCCCGGCCTTACATTTTCCAATGAGCT--TATCAGCAGAGATGAGGGCTTACATT 220903
Query 58111 CTGATTTTGCGTGCCTAATGT 58131
||| ||||| ||||| ||||
Sbjct 220904 GTGACTTTGCCTGCCTGATGT 220924
>seq657
Length=1571634
Score = 116 bits (128), Expect = 3e-21
Identities = 115/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| || |||||||| ||||| || || || ||||| || || || ||
Sbjct 950077 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 950018
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
|||| || ||||||||| || ||||| || ||||| |||||||||||||| || |||
Sbjct 950017 CCCAGGTTTTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTG 949958
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196
|||||||| ||| || || ||||| ||
Sbjct 949957 CCCGTCTCTGTCTGAGATTCAATGATGGC 949929
>seq31
Length=11202321
Score = 84.2 bits (92), Expect = 2e-11
Identities = 116/161 (72%), Gaps = 1/161 (1%)
Strand=Plus/Minus
Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246
||||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || || ||
Sbjct 8041145 TCAAA-ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAG 8041087
Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306
|| |||| |||| | ||||| | || ||| || || ||| | || ||
Sbjct 8041086 CCCAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCT 8041027
Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||||||||| || || || |||||||| ||| |||||||
Sbjct 8041026 GACCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGA 8040986
>seq70
Length=7483708
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|||||||| || || || ||||| ||||| ||||| || ||||| | || || || ||
Sbjct 5585921 AACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCT 5585862
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|||| | || | ||||| | || |||||||||| | | || || |||
Sbjct 5585861 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGACATCCCACCAGAC 5585802
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||| || ||||| |||||||||||| |||| || | || || |||||
Sbjct 5585801 CAGCAGAAGCTGATATTTGCTGGCAAACAGCTGGAGGATCGCCTCACCCTGTCAGATTAA 5585742
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || ||||| || || | || ||||| ||
Sbjct 5585741 AACATCCAGAAAGAGTCCACCTTGCACCTGGTGCT 5585707
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445594105714320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |