Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1345 118 9e-22 seq657 116 3e-21 seq31 84.2 2e-11 seq70 82.4 7e-11 >seq1345 Length=786133 Score = 118 bits (130), Expect = 9e-22 Identities = 406/621 (65%), Gaps = 48/621 (8%) Strand=Plus/Plus Query 57519 TTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAAC 57578 ||| |||| || |||| | |||||||| ||||| || |||| | || || ||| | Sbjct 220344 TTGGAAGAAAACCCCCACTGCTTTGTCATCTTTCCCATCAAATACCATGATATCTGGCAG 220403 Query 57579 ATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGAT 57638 |||||||| || | || || || |||||||| | || || || ||||| || |||||| Sbjct 220404 ATGTACAAGAAAGATGAGGCCTCCTTTTGGACGGCTGAGGAGGTGGACCTTTCCAAGGAT 220463 Query 57639 CTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTT--GG 57696 | | ||||| | || ||| ||||||| || |||| | | | |||| || Sbjct 220464 ATTCAGTACTGGGAAGCTCTGAAACCCAGTGAGAGACATGTTAT--ACCTCATGTTCGGG 220521 Query 57697 CGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA--CA 57754 | || || || ||| || | || || || ||||| ||||| |||| | |||| || Sbjct 220522 CTTTCTTTGCAGCAAGTGACAGCATAGTCAATGAGAACTTGGT-GAAAC-TATTCAGCCA 220579 Query 57755 AGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGT 57814 |||||| ||||| || |||| | || || || || || ||| | | ||| ||||| | Sbjct 220580 AGAAGTTCAAGTCACAGAGGTCCGCTGTTTCTATGGCTTCCAAATTGGCATAGAAAATAT 220639 Query 57815 GCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CAACGACGAGAAA 57872 ||||| |||||||| || || || || || | | ||| ||| || ||| | Sbjct 220640 ACATTCTGAAATGTACAGTCTCCTTATTGACACAT---TAAAGATTCCAAGGA-GAGGGA 220695 Query 57873 CGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCA 57932 ||| || ||||| || || |||| ||||| | || || Sbjct 220696 -GTAT-CTCTTCAATGCTATTGAAAAGATGCC-----TTGC---------------GT-- 220731 Query 57933 ATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCC 57992 | | ||| | |||| | || || | | || | | | || || |||||| Sbjct 220732 -TGCACTGGGGACAAAGGG-----GCTACATATGGAGAATGTGTTGTGGCCTTTGCCGCC 220785 Query 57993 GTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGC 58052 || ||||| || |||||||| || ||||| ||||||| ||| ||||||| || || Sbjct 220786 GTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTGAAGAAGCGGGGA 220845 Query 58053 CTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC-GC-GCGACGAGGGTCTCCATA 58110 || ||||||||||| || ||| ||| ||| | |||| || | || ||||| | ||| Sbjct 220846 CTTATGCCCGGCCTTACATTTTCCAATGAGCT--TATCAGCAGAGATGAGGGCTTACATT 220903 Query 58111 CTGATTTTGCGTGCCTAATGT 58131 ||| ||||| ||||| |||| Sbjct 220904 GTGACTTTGCCTGCCTGATGT 220924 >seq657 Length=1571634 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| || || || ||||| || || || || Sbjct 950077 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 950018 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| |||||||||||||| || ||| Sbjct 950017 CCCAGGTTTTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTG 949958 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||||||| ||| || || ||||| || Sbjct 949957 CCCGTCTCTGTCTGAGATTCAATGATGGC 949929 >seq31 Length=11202321 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/161 (72%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 8041145 TCAAA-ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAG 8041087 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| |||| | ||||| | || ||| || || ||| | || || Sbjct 8041086 CCCAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCT 8041027 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||||| || || || |||||||| ||| ||||||| Sbjct 8041026 GACCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGA 8040986 >seq70 Length=7483708 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| ||||| ||||| || ||||| | || || || || Sbjct 5585921 AACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCT 5585862 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | || | ||||| | || |||||||||| | | || || ||| Sbjct 5585861 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGACATCCCACCAGAC 5585802 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| || ||||| |||||||||||| |||| || | || || ||||| Sbjct 5585801 CAGCAGAAGCTGATATTTGCTGGCAAACAGCTGGAGGATCGCCTCACCCTGTCAGATTAA 5585742 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || ||||| || || | || ||||| || Sbjct 5585741 AACATCCAGAAAGAGTCCACCTTGCACCTGGTGCT 5585707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445594105714320