Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1345 260 2e-64 seq498 241 2e-58 seq657 125 9e-24 seq30 104 3e-17 seq442 100 4e-16 seq184 96.9 4e-15 seq78 95.1 2e-14 seq3761 91.5 2e-13 >seq1345 Length=786133 Score = 260 bits (288), Expect = 2e-64 Identities = 581/871 (67%), Gaps = 31/871 (4%) Strand=Plus/Minus Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 |||||| || ||||| | || || || || || || |||| ||| | ||| |||||||| Sbjct 221205 TTGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTC 221146 Query 33353 CATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAA 33412 |||||| ||||| | ||| || ||| |||| || ||||| |||| || |||| Sbjct 221145 CATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCATCAG 221086 Query 33413 TCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 33472 || || | || ||||| || || ||||||| | | ||||| || || || || Sbjct 221085 CCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCTT 221026 Query 33473 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAA 33532 || || | ||| | || || || || || || || | ||||| | || || Sbjct 221025 CACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTATTTT 220966 Query 33533 TCTAACGGTTT-CTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAAT 33591 || || | | || | | | | | |||| | || || ||||||| || || || | Sbjct 220965 ACTTACTCTCTGCTCCTATGGCTTG-TGTACCAGGTGCTTGAACATCAGGCAGGCAAAGT 220907 Query 33592 CGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTA 33651 | || || | ||||| ||||| || || | || || ||||| || || |||||||| | Sbjct 220906 CACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATAA 220847 Query 33652 GGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTA 33711 | || ||||| || ||||| ||||| || || || || || ||||||||||| ||||| | Sbjct 220846 GTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCA 220787 Query 33712 CTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAG 33771 | || |||||||| | || | ||||||| ||||| || | |||| Sbjct 220786 CGGCGGCAAAGGCCACAACACATTCTCCAT-------------ATGTAGCC-CCTTTGTC 220741 Query 33772 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33831 |||| | || || ||||||||| |||| || ||||| |||||||| | Sbjct 220740 CCCAGT--GC---------AACGCAAGGCATCTTTTCAATAGCATTGAAGAGATACTCCC 220692 Query 33832 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33891 | || || ||||||| | || || || | ||||| |||||||| ||||| || | Sbjct 220691 TCTCCTTGGAATCTTTA----ATGTGTCAATAAGGAGACTGTACATTTCAGAATGTATAT 220636 Query 33892 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 33951 |||| ||| | || || || || |||||||| | |||| || | || |||||| | Sbjct 220635 TTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTCTTGGC 220576 Query 33952 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATA 34011 ||| ||| | || || ||||| ||||| | ||||| |||||||| || ||| | Sbjct 220575 TGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGCCCGAA 220516 Query 34012 CATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAG 34071 |||| ||||| || | | || ||| | || | ||| | | ||||| || | Sbjct 220515 CATGAGGTATAACATGTCTCTCACTGGGTTTCAGAGCTTCCCAGTACTGAATATCCTTGG 220456 Query 34072 ATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGA 34131 | | ||||| || || | |||||||| || ||||| | || || ||||| | ||||| Sbjct 220455 AAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACATCTGCCAGA 220396 Query 34132 TGTCATGATATTGGATTGGGAAAATAACAAA 34162 | ||||| |||| ||| || || || ||||| Sbjct 220395 TATCATGGTATTTGATGGGAAAGATGACAAA 220365 >seq498 Length=2542268 Score = 241 bits (266), Expect = 2e-58 Identities = 614/933 (66%), Gaps = 60/933 (6%) Strand=Plus/Plus Query 33230 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTC 33285 |||| ||| || ||| |||| || | ||||| ||| ||| |||| ||||| || | Sbjct 2186306 GTTTACTTAGAAATCAGCATCCAAGGTAAAATAATTCTCTG-TTGAACTCGACATCAC-C 2186363 Query 33286 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33345 |||| | ||||| || || | || || || || || | || |||||||| | ||| | Sbjct 2186364 CCATCCTCTGGTACTCGCCT-CTCGCTTCTCAAAGAAGCTGGTCTTTCCTTCTAGTGAAA 2186422 Query 33346 TATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAG 33405 ||||||||||||| | ||| ||||| || ||| |||| Sbjct 2186423 TATTTTCCATGAAGTGAAATGGATTCTCTACTTTGAAAAT-------------------- 2186462 Query 33406 AAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA 33465 || || ||||| || || || || || ||||||| || ||||| || | Sbjct 2186463 ----CAGCCTGTCTGCCACAAACTCGATGTACTGCTTCATCAGAGTGCAGTTCATCCCGA 2186518 Query 33466 TGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTA 33525 |||| || || || | ||| | ||||| || | || || || || || || | Sbjct 2186519 TGAGCTTCACAGGCAAGGCCTCCGTAAGGAACTTCTGCTCTATCCTCACTGCGTTGACAA 2186578 Query 33526 TAATAAATCTAACGGTTT-CTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACAT 33584 | || | | || | | || | | | | | |||| | || || ||||||| || Sbjct 2186579 TTATTTCTTTTACCCTCTGCTCCGATGGCTTG-TGTACCAGGTGCTTGAACATCAGGCAG 2186637 Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 || || || ||||| | ||||||||||| || || | || || ||||| || || ||| Sbjct 2186638 GCAAAGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCG 2186697 Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATT 33704 ||||| || || |||| || ||||| ||||| || | ||| || ||| |||||||| Sbjct 2186698 GGCATCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAAGAACCG---AAGAAGATG 2186754 Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATC 33761 ||||| || || |||||||| | || | |||| || | | | |||| ||| Sbjct 2186755 CCTTCCACGGCGGCAAAGGCGACAACACGTTCTCTGTATGTAGCCTCTTTGTCCCAAATC 2186814 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 || ||||| ||||||||||| || ||| |||||||||||||||| ||| | ||| Sbjct 2186815 CAACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATCGTTTCTATAGCAATGAAG 2186874 Query 33822 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33881 ||||| | | || ||| |||||||| || || || || | ||||| |||||||| Sbjct 2186875 AGATACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATAAGGAGACTGTACATTTCA 2186934 Query 33882 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 33941 ||||| |||||||| ||||| || || || || |||||||| | ||||| || | || Sbjct 2186935 GAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGA 2186994 Query 33942 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAA 34001 |||||| | |||||| | | || || ||||| ||||| | ||||| ||||| || Sbjct 2186995 ACTTCTTGGCTAAATCGCT---CCAAGTTCTCATTGACTATGCTGTCACTCGCTGCGAAG 2187051 Query 34002 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 34061 || || || || |||||||| | | || | ||| | || ||| | | | Sbjct 2187052 AAAGCACGAACGTGAGGTATAAAATGTCTCTCCT-GGGTTTCAGAGCTCCCCAGTGCTGG 2187110 Query 34062 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 34121 |||||||| || | || ||||| || ||||| || || || ||| Sbjct 2187111 ATATCTTTGGA----------------AAGGTTCAAAAGGAGGCCTCCGCTTTCTTGTAC 2187154 Query 34122 ATATTCCAGATGTCATGATATTGGATTGGGAAA 34154 || | |||||| ||||| |||| || ||||||| Sbjct 2187155 ATGTGCCAGATATCATGGTATTTGA-TGGGAAA 2187186 >seq657 Length=1571634 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| || || |||||||| || ||||||||||| ||||| | Sbjct 954656 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 954597 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 954596 GACTCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAA 954537 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 954536 CTGTTTCTTACACCATA 954520 Score = 105 bits (116), Expect = 8e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||||||||| |||||| ||| | || || || |||||||| | Sbjct 957729 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 957670 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 957669 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCTGCCATCTTGAGAACAGTCT 957610 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | || ||||| | | |||| | || || |||| Sbjct 957609 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 957559 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || ||||| || || | || || ||||| | ||| || || || || || || | Sbjct 951253 CATACGTTTCATAAGGGCCATACTCCTTTGCTAGGTCACAGCTGGCTTCCAAAGCTCCAT 951194 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||| ||||||||||||| |||||| | || ||||| ||||| ||||| || | Sbjct 951193 AATAAATAGTTTCAAAGATCTGCTTATTCAATAACTGGGCTTCTGGGCTCTCAAAGGGGT 951134 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | || || || || || |||| ||||| || ||||| || || || | ||| | Sbjct 951133 ATCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACTCCAATTCCAATGGGCCGATGGC 951074 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 951073 GTTTATTGGA 951064 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | | || Sbjct 947915 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 947856 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || || ||||||||||| || | || |||||| | | || || | ||||| Sbjct 947855 CTGCTCTTCCTTCCCTGTATTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 947796 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 || |||| ||| || || | ||||||| || Sbjct 947795 AGGCTCCAGGTAAATAGCAAATGCTCCAGGGCG 947763 >seq30 Length=10348747 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 188483 TCTGTTGTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCA 188542 |||| |||||||||||| ||| | | ||| | ||||||||||| ||||||||||| Sbjct 7441907 TCTGCAGTTACTTTCTATAATGTGTACCTGGTTCTGCAAGCTTTCATACTGACTACTGCA 7441848 Query 188543 GTGTTTCTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTA 188602 || || |||| ||||| | | ||||||||| ||||||||||||||||| || ||| | Sbjct 7441847 GTCTTCCTTGGCTTGACTGCCTATACTCTACAGTCAAAGAGAGATTTCAGCAAGTTTGGA 7441788 Query 188603 ACAGG 188607 |||| Sbjct 7441787 GCAGG 7441783 Score = 89.7 bits (98), Expect = 6e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 188173 GCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCACA 188232 |||||||||||||||| ||||||||||| | ||||| |||||||| ||||||||||||| Sbjct 7457073 GCTCCTCCATCGAGGATGACTTCAACTACGGCAGCTGCGTGGCGTCGGCCAGCGTGCACA 7457014 Query 188233 TACGAATGG 188241 | || |||| Sbjct 7457013 TCCGCATGG 7457005 >seq442 Length=2622005 Score = 100 bits (110), Expect = 4e-16 Identities = 233/346 (67%), Gaps = 19/346 (5%) Strand=Plus/Plus Query 162451 TTTGCCAACACAAAGGGTGGATATTTGTTCATTGGAGTTGATAATAATACACACAAAGTA 162510 ||||||||||| | || ||||||||||||||||| | ||| || ||| || | Sbjct 2582747 TTTGCCAACACTGATGGGGGATATTTGTTCATTGGTTTGGATGGGAACGAACAGCAAATC 2582806 Query 162511 ATTGGATTC-ACGGTGGGTCACGA-CTACCTCAAACTGGTAGAGAGAGATATAGAAAAGT 162568 ||||| || | | | | | || | | || ||| ||||||| || ||||| || | Sbjct 2582807 ATTGGTTTTGAAGCAGAG--AGGAGCGATCTTGAACATCTAGAGAGTGAAATAGACAAAT 2582864 Query 162569 ATATCCAAAAACTTCCTGTTGTGCATTTCTGCAAGAAAAAAGAGGACATCAAGTACGCAT 162628 |||||| | || ||||| || ||||| || | | ||| | || |||||| ||| Sbjct 2582865 GCATCCAACAGCTGCCTGTCACTCACTTCTGTGAGGAGCAGGAGAAGATAAAGTACACAT 2582924 Query 162629 GTAGATTCATCAAGGTGTATAAACCTGGTGATGAGACTACCTCGACATATGTGTGCGCAA 162688 | | ||||||| || | | |||||| | | | | ||| |||| || ||| Sbjct 2582925 GCAAATTCATCCCAGTCCACAGACCTGGAGCCGTGTGTTCCT------ATGTCTGTGCAC 2582978 Query 162689 TCAAAGTGGAAAGATGCTGCTGTGCTGTGTT---TGCGGATTGGCCAGAATCATGGTACA 162745 ||| |||||| |||| ||||||||||||||| ||| || ||| || || ||| ||| Sbjct 2582979 TCAGAGTGGAGAGATTCTGCTGTGCTGTGTTCTCTGCAGA---GCCCGATTCCTGGCACA 2583035 Query 162746 TGGATACTAGTGGTAGTATGAAGAAGTATTCTCCAGATGAATGGGT 162791 |||| | | || |||||| || | || |||| |||||||| Sbjct 2583036 TGGAAGACA---GCTGTGTGAAGAGGTTTACTACAGAGGAATGGGT 2583078 Score = 96.9 bits (106), Expect = 4e-15 Identities = 227/341 (67%), Gaps = 9/341 (3%) Strand=Plus/Plus Query 162451 TTTGCCAACACAAAGGGTGGATATTTGTTCATTGGAGTTGATAATAATACACACAAAGTA 162510 ||||||||||| | || ||||||||||||||||| | ||| | || | | | || | Sbjct 2595170 TTTGCCAACACTGATGGAGGATATTTGTTCATTGGTTTGGATGAAAAAAAAAAGCAAATT 2595229 Query 162511 ATTGGATTCACGGTGGGTCACGACTACCTCAAACTGGTAGAGAGAGATATAGAAAAGTAT 162570 | ||| || | | | | | || | || | | || || | || ||||||| || Sbjct 2595230 ACTGGTTTTAAAGCAGATGAGAACAAACTTAGGGAGCTAAAGTGTGAAATAGAAAGGTGC 2595289 Query 162571 ATCCAAAAACTTCCTGTTGTGCATTTCTGCAAGAAAAAAGAGGACATCAAGTACGCATGT 162630 |||||| | |||||||| || ||||| || | || |||| || |||||| |||| Sbjct 2595290 ATCCAACAGCTTCCTGTCACTCACTTCTGTGAGGAGAAGCAGGAGATAAAGTACACATGC 2595349 Query 162631 AGATTCATCAAGGTGTATAAACCTGGTGATGAGACTACCTCGACATATGTGTGCGCAATC 162690 | ||| ||| || ||| | | |||||| | ||| |||| || ||| || Sbjct 2595350 AAATTTATCCCAGTCAGCAAATCAGAAGATGAGTGTTCCT------ATGTCTGTGCACTC 2595403 Query 162691 AAAGTGGAAAGATGCTGCTGTGCTGTGTTTGCGGATTGGCCAGAATCATGGTACATGGAT 162750 | |||||| |||| ||||||||||||||| || | ||| || || ||| |||| Sbjct 2595404 AGAGTGGAGAGATTCTGCTGTGCTGTGTTCGCTGCAGAGCCTGATTCCTGG--CATGTTG 2595461 Query 162751 ACTAGTGGTAGTATGAAGAAGTATTCTCCAGATGAATGGGT 162791 | | | | || |||||| || | | |||| |||||||| Sbjct 2595462 AAGACAGCT-GTGTGAAGAGGTTTACCACAGAGGAATGGGT 2595501 >seq184 Length=3314118 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || || || || | || || ||||| |||||||||||||| ||||| | ||| | Sbjct 1994076 CCTCATCCCTGCTGATGAGCTCATTTGAAAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 1994135 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| | ||| ||||| || || ||||| || ||||| || || || |||| Sbjct 1994136 TCAGCCAGAATATAGCAGCAAATGACCCAGAGAAGAAAATGCCTTCCACGGCGGCGAAGG 1994195 Query 33724 CAATAAGTCTCTCTCC 33739 | | | |||||| || Sbjct 1994196 CCACCACTCTCTCCCC 1994211 >seq78 Length=6419775 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/145 (75%), Gaps = 5/145 (3%) Strand=Plus/Plus Query 33230 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTC 33285 |||| ||| || ||| |||| || | |||| ||| ||| |||| ||||| || | Sbjct 5583561 GTTTACTTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCC 5583619 Query 33286 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33345 |||| | |||||||| ||||| || || || || || || || |||||||| | ||| | Sbjct 5583620 CCATCCTCTGGTATTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 5583679 Query 33346 TATTTTCCATGAAATCAAACGGATT 33370 ||||||||||||| ||||| ||||| Sbjct 5583680 TATTTTCCATGAAGTCAAATGGATT 5583704 >seq3761 Length=8927 Score = 91.5 bits (100), Expect = 2e-13 Identities = 226/341 (66%), Gaps = 9/341 (3%) Strand=Plus/Minus Query 162451 TTTGCCAACACAAAGGGTGGATATTTGTTCATTGGAGTTGATAATAATACACACAAAGTA 162510 ||||||||||| | || ||||||||||||||||| | ||| | || ||| | || | Sbjct 7048 TTTGCCAACACTGATGGAGGATATTTGTTCATTGGTTTGGATGAAAAAACAAAGCAAATT 6989 Query 162511 ATTGGATTCACGGTGGGTCACGACTACCTCAAACTGGTAGAGAGAGATATAGAAAAGTAT 162570 | ||| || | | | | || | || | | || || | || ||||||| || Sbjct 6988 ACTGGTTTTGAAGCAGATGAGAACAAACTTAGGGAGCTAAAGTGTGAAATAGAAAGGTGC 6929 Query 162571 ATCCAAAAACTTCCTGTTGTGCATTTCTGCAAGAAAAAAGAGGACATCAAGTACGCATGT 162630 |||||| | |||||||| || ||||| || | || |||| || |||||| |||| Sbjct 6928 ATCCAACAGCTTCCTGTCACTCACTTCTGTGAGGAGAAGCAGGAGATAAAGTACACATGC 6869 Query 162631 AGATTCATCAAGGTGTATAAACCTGGTGATGAGACTACCTCGACATATGTGTGCGCAATC 162690 | ||| ||| || ||| | | |||||| | ||| |||| || ||| | Sbjct 6868 AAATTTATCCCAGTCAGCAAATCAGAAGATGAGTGTTCCT------ATGTCTGTGCACTG 6815 Query 162691 AAAGTGGAAAGATGCTGCTGTGCTGTGTTTGCGGATTGGCCAGAATCATGGTACATGGAT 162750 | |||||| |||| ||||||||||||||| || | ||| || || ||| |||| Sbjct 6814 AGAGTGGAGAGATTCTGCTGTGCTGTGTTCGCTGCAGAGCCCGATTCCTGG--CATGTTG 6757 Query 162751 ACTAGTGGTAGTATGAAGAAGTATTCTCCAGATGAATGGGT 162791 | | | | || |||||| || | | |||| |||||||| Sbjct 6756 AAGACAGCT-GTGTGAAGAGGTTTACCTCAGAGGAATGGGT 6717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629574167624880