Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1345 167 2e-36 seq498 159 3e-34 seq184 98.7 9e-16 seq657 93.3 4e-14 seq95 84.2 2e-11 >seq1345 Length=786133 Score = 167 bits (184), Expect = 2e-36 Identities = 602/933 (65%), Gaps = 48/933 (5%) Strand=Plus/Minus Query 11277 TTAATTAAAAATCTATATCCGTAGAAAATATATTCTCTTCTTTATTTGTAAACACCCCCA 11336 ||| ||| ||||| ||||| | ||| ||||||| | ||| | | | |||||| Sbjct 221265 TTACTTAGAAATCAGTATCCAAGGTAAAAGAATTCTCTGTTGAATTCGATATCGCCCCCA 221206 Query 11337 TCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATAT 11396 | || || || | ||| | || || || || ||||| | ||||||||| |||| Sbjct 221205 T----TGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATAT 221150 Query 11397 ACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTA 11456 ||||| ||| ||| | ||| | ||| ||||| | || | | | || | ||| | Sbjct 221149 TTTCCATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCA 221090 Query 11457 ATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAA 11516 | || || | || ||||| || ||||| ||| | | | ||||| || |||| Sbjct 221089 TCAGCCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAA 221030 Query 11517 GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576 | | ||| || | || | || | ||||||| ||||| | | |||| || |||| Sbjct 221029 GCTTCACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTA 220970 Query 11577 TCGACGTTA-TAACT--TCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACG 11633 | ||| | || |||| |||| |||| | || || ||||| | || | Sbjct 220969 TTTTACTTACTCTCTGCTCCT---ATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGG 220913 Query 11634 CAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGG 11693 |||| ||||||||||| || || ||||| || || || ||||| |||||||| | |||| Sbjct 220912 CAAAGTCACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGG 220853 Query 11694 GCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTC 11753 |||| | ||| || || || | ||| ||||| | ||||| |||||||||||||| || | Sbjct 220852 GCATAAGTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGC 220793 Query 11754 CCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATT 11813 | ||||| || ||||| || || || | ||||||||| ||| || || || Sbjct 220792 CTTCCACGGCGGCAAAGGCCACAACACATTCTCCATA-----TGTAGC-------CCCTT 220745 Query 11814 TTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAAT 11873 || ||| ||| | ||||| ||| |||| ||||| || || | || Sbjct 220744 ---TGTCCC---CAG-------TGCAACGCAAGGCATCTTTTCAATAGCATTGAAGAGAT 220698 Query 11874 GCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAAT 11933 | | || | |||| ||| |||| || || | | ||| |||||||| |||| Sbjct 220697 ACTCCCTCTCCTTGGAATCT-TTA---ATGTGTCAATAAGGAGACTGTACATTTCAGAAT 220642 Query 11934 GAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACAT 11993 | |||||||| || | ||||| || ||||||||||| || |||||| || || | Sbjct 220641 GTATATTTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTT 220582 Query 11994 CCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATG 12053 | ||| || | | || |||||||| || || | ||||| | |||||| || | Sbjct 220581 CTTGGCTGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAG 220522 Query 12054 CTAGTATATGTTTTATAAAGTATTTTTC----GTCTTTAGTTAATTTATCCCAATCATCT 12109 | | | ||| ||||| | | | || | || || | | ||||| | | Sbjct 220521 CCCGAACATGAGGTATAACATGTCTCTCACTGGGTTTCAG--AGCT--TCCCAGTACTGA 220466 Query 12110 AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATAC 12169 | ||| || || | || || || ||| | |||||||| ||| | || || ||| Sbjct 220465 ATATCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTAC 220406 Query 12170 ATTTTCCAGATATCATGATACTTAATAGGGAAA 12202 || | |||||||||||| || || || |||||| Sbjct 220405 ATCTGCCAGATATCATGGTATTTGAT-GGGAAA 220374 >seq498 Length=2542268 Score = 159 bits (176), Expect = 3e-34 Identities = 258/370 (70%), Gaps = 6/370 (2%) Strand=Plus/Plus Query 11615 TGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCA 11674 || || ||||| | || ||||| ||||| ||||| || |||||||| || || || ||| Sbjct 2186620 TGCTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCA 2186679 Query 11675 TTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAAT 11734 || |||||||| | |||||||||| ||| | || || | ||| ||||| | | || Sbjct 2186680 TTGGAAAATGTAAGGCCGGGCATCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAA 2186739 Query 11735 GAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATA-- 11792 ||||| ||||| || || ||||| || ||||| || || || | ||||| ||| Sbjct 2186740 GAACCG---AAGAAGATGCCTTCCACGGCGGCAAAGGCGACAACACGTTCTCTGTATGTA 2186796 Query 11793 -CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATT 11851 ||| ||| | ||||| |||||| || || ||||| || || | ||| Sbjct 2186797 GCCTCTTTGTCCCAAATCCAACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATC 2186856 Query 11852 GTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATT 11911 ||||||||||| | || | || | | || || |||| | | || || || || Sbjct 2186857 GTTTCTATAGCAATGAAGAGATACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATA 2186916 Query 11912 AATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACAT 11971 | | ||| |||||||| ||||| || |||||||| || ||||| || ||||||||||| Sbjct 2186917 AGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 2186976 Query 11972 CGTGCCTCTG 11981 || ||||||| Sbjct 2186977 CGGGCCTCTG 2186986 >seq184 Length=3314118 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || || || || || || ||||| ||||| || | ||||||||| | |||| || || Sbjct 1994078 TCATCCCTGCTGATGAGCTCATTTGAAAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 1994137 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||||||||||||||| ||||| ||||| || || ||||| || || || || Sbjct 1994138 AGCCAGAATATAGCAGCAAATGACCCAGAGAAGAAAATGCCTTCCACGGCGGCGAAGGCC 1994197 Query 11774 ACTACTCTTTCTCC 11787 || ||||| || || Sbjct 1994198 ACCACTCTCTCCCC 1994211 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 11891 TCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCT 11950 ||||| | || |||||||||| |||||| ||||| |||||||||| ||| || || Sbjct 1999351 TCTCTGATGTAAGTATCTATTAGTAAACTGTACATCTCTGAATGAACATTCTCGATGAGA 1999410 Query 11951 ATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 || ||||| ||||||||||| || ||||||| | ||| || ||| Sbjct 1999411 ATCTGAAAGCCATAGAAACAGCGGGCCTCTGGAACCTGCACCTCC 1999455 >seq657 Length=1571634 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || || || | || || || || || ||||| ||||||||| Sbjct 954656 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 954597 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || |||||||||||||| || || || | Sbjct 954596 GACTCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAA 954537 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 954536 CTGTTTCTTACACCAT 954521 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 38412 AGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATT 38471 ||| || || || || | |||||||| ||||| | ||||| || || || | || Sbjct 940721 AGTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTT 940662 Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531 || ||||| ||| || |||| ||||| | |||||| || | |||||||||||| | Sbjct 940661 GTAGGTTTCAATTGCAGCATCAATATCCTCTTTGTGAATCCCCACAGATACCCTCATCAA 940602 Query 38532 CATATGTTGTGGTCTTTC 38549 |||||||||||||||||| Sbjct 940601 CATATGTTGTGGTCTTTC 940584 >seq95 Length=6891963 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 ||| ||||| || ||||||| |||||| || || || ||||| |||||| | | ||| Sbjct 4646953 AAAGTCACAGTGCAAACCTTAGTCTCTGCTAATAAGCTCATTGGAAAATATGCGGCTGGG 4646894 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 || | ||||| |||| || | ||| || | | || |||||||||||||| ||||| Sbjct 4646893 CACCCATCCTTGTTTCTTGAGCCAGAACACTGATATGAAAGAACCAGAAAAGAAGATTCC 4646834 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA 11790 | ||| | ||| ||||| || ||||||||| Sbjct 4646833 TTTCACGGTGTCAAGGGCTACAACATGTTCTCCATA 4646798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468343709308240