Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq1345 167 2e-36
seq498 159 3e-34
seq184 98.7 9e-16
seq657 93.3 4e-14
seq95 84.2 2e-11
>seq1345
Length=786133
Score = 167 bits (184), Expect = 2e-36
Identities = 602/933 (65%), Gaps = 48/933 (5%)
Strand=Plus/Minus
Query 11277 TTAATTAAAAATCTATATCCGTAGAAAATATATTCTCTTCTTTATTTGTAAACACCCCCA 11336
||| ||| ||||| ||||| | ||| ||||||| | ||| | | | ||||||
Sbjct 221265 TTACTTAGAAATCAGTATCCAAGGTAAAAGAATTCTCTGTTGAATTCGATATCGCCCCCA 221206
Query 11337 TCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATAT 11396
| || || || | ||| | || || || || ||||| | ||||||||| ||||
Sbjct 221205 T----TGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATAT 221150
Query 11397 ACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTA 11456
||||| ||| ||| | ||| | ||| ||||| | || | | | || | ||| |
Sbjct 221149 TTTCCATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCA 221090
Query 11457 ATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAA 11516
| || || | || ||||| || ||||| ||| | | | ||||| || ||||
Sbjct 221089 TCAGCCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAA 221030
Query 11517 GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576
| | ||| || | || | || | ||||||| ||||| | | |||| || ||||
Sbjct 221029 GCTTCACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTA 220970
Query 11577 TCGACGTTA-TAACT--TCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACG 11633
| ||| | || |||| |||| |||| | || || ||||| | || |
Sbjct 220969 TTTTACTTACTCTCTGCTCCT---ATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGG 220913
Query 11634 CAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGG 11693
|||| ||||||||||| || || ||||| || || || ||||| |||||||| | ||||
Sbjct 220912 CAAAGTCACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGG 220853
Query 11694 GCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTC 11753
|||| | ||| || || || | ||| ||||| | ||||| |||||||||||||| || |
Sbjct 220852 GCATAAGTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGC 220793
Query 11754 CCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATT 11813
| ||||| || ||||| || || || | ||||||||| ||| || || ||
Sbjct 220792 CTTCCACGGCGGCAAAGGCCACAACACATTCTCCATA-----TGTAGC-------CCCTT 220745
Query 11814 TTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAAT 11873
|| ||| ||| | ||||| ||| |||| ||||| || || | ||
Sbjct 220744 ---TGTCCC---CAG-------TGCAACGCAAGGCATCTTTTCAATAGCATTGAAGAGAT 220698
Query 11874 GCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAAT 11933
| | || | |||| ||| |||| || || | | ||| |||||||| ||||
Sbjct 220697 ACTCCCTCTCCTTGGAATCT-TTA---ATGTGTCAATAAGGAGACTGTACATTTCAGAAT 220642
Query 11934 GAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACAT 11993
| |||||||| || | ||||| || ||||||||||| || |||||| || || |
Sbjct 220641 GTATATTTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTT 220582
Query 11994 CCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATG 12053
| ||| || | | || |||||||| || || | ||||| | |||||| || |
Sbjct 220581 CTTGGCTGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAG 220522
Query 12054 CTAGTATATGTTTTATAAAGTATTTTTC----GTCTTTAGTTAATTTATCCCAATCATCT 12109
| | | ||| ||||| | | | || | || || | | ||||| | |
Sbjct 220521 CCCGAACATGAGGTATAACATGTCTCTCACTGGGTTTCAG--AGCT--TCCCAGTACTGA 220466
Query 12110 AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATAC 12169
| ||| || || | || || || ||| | |||||||| ||| | || || |||
Sbjct 220465 ATATCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTAC 220406
Query 12170 ATTTTCCAGATATCATGATACTTAATAGGGAAA 12202
|| | |||||||||||| || || || ||||||
Sbjct 220405 ATCTGCCAGATATCATGGTATTTGAT-GGGAAA 220374
>seq498
Length=2542268
Score = 159 bits (176), Expect = 3e-34
Identities = 258/370 (70%), Gaps = 6/370 (2%)
Strand=Plus/Plus
Query 11615 TGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCA 11674
|| || ||||| | || ||||| ||||| ||||| || |||||||| || || || |||
Sbjct 2186620 TGCTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCA 2186679
Query 11675 TTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAAT 11734
|| |||||||| | |||||||||| ||| | || || | ||| ||||| | | ||
Sbjct 2186680 TTGGAAAATGTAAGGCCGGGCATCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAA 2186739
Query 11735 GAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATA-- 11792
||||| ||||| || || ||||| || ||||| || || || | ||||| |||
Sbjct 2186740 GAACCG---AAGAAGATGCCTTCCACGGCGGCAAAGGCGACAACACGTTCTCTGTATGTA 2186796
Query 11793 -CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATT 11851
||| ||| | ||||| |||||| || || ||||| || || | |||
Sbjct 2186797 GCCTCTTTGTCCCAAATCCAACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATC 2186856
Query 11852 GTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATT 11911
||||||||||| | || | || | | || || |||| | | || || || ||
Sbjct 2186857 GTTTCTATAGCAATGAAGAGATACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATA 2186916
Query 11912 AATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACAT 11971
| | ||| |||||||| ||||| || |||||||| || ||||| || |||||||||||
Sbjct 2186917 AGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 2186976
Query 11972 CGTGCCTCTG 11981
|| |||||||
Sbjct 2186977 CGGGCCTCTG 2186986
>seq184
Length=3314118
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| || || || || || ||||| ||||| || | ||||||||| | |||| || ||
Sbjct 1994078 TCATCCCTGCTGATGAGCTCATTTGAAAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 1994137
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||||||||||||||| ||||| ||||| || || ||||| || || || ||
Sbjct 1994138 AGCCAGAATATAGCAGCAAATGACCCAGAGAAGAAAATGCCTTCCACGGCGGCGAAGGCC 1994197
Query 11774 ACTACTCTTTCTCC 11787
|| ||||| || ||
Sbjct 1994198 ACCACTCTCTCCCC 1994211
Score = 86.0 bits (94), Expect = 6e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 11891 TCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCT 11950
||||| | || |||||||||| |||||| ||||| |||||||||| ||| || ||
Sbjct 1999351 TCTCTGATGTAAGTATCTATTAGTAAACTGTACATCTCTGAATGAACATTCTCGATGAGA 1999410
Query 11951 ATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995
|| ||||| ||||||||||| || ||||||| | ||| || |||
Sbjct 1999411 ATCTGAAAGCCATAGAAACAGCGGGCCTCTGGAACCTGCACCTCC 1999455
>seq657
Length=1571634
Score = 93.3 bits (102), Expect = 4e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || || || | || || || || || ||||| |||||||||
Sbjct 954656 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 954597
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || |||||||||||||| || || || |
Sbjct 954596 GACTCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAA 954537
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 954536 CTGTTTCTTACACCAT 954521
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 38412 AGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATT 38471
||| || || || || | |||||||| ||||| | ||||| || || || | ||
Sbjct 940721 AGTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTT 940662
Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531
|| ||||| ||| || |||| ||||| | |||||| || | |||||||||||| |
Sbjct 940661 GTAGGTTTCAATTGCAGCATCAATATCCTCTTTGTGAATCCCCACAGATACCCTCATCAA 940602
Query 38532 CATATGTTGTGGTCTTTC 38549
||||||||||||||||||
Sbjct 940601 CATATGTTGTGGTCTTTC 940584
>seq95
Length=6891963
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694
||| ||||| || ||||||| |||||| || || || ||||| |||||| | | |||
Sbjct 4646953 AAAGTCACAGTGCAAACCTTAGTCTCTGCTAATAAGCTCATTGGAAAATATGCGGCTGGG 4646894
Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754
|| | ||||| |||| || | ||| || | | || |||||||||||||| |||||
Sbjct 4646893 CACCCATCCTTGTTTCTTGAGCCAGAACACTGATATGAAAGAACCAGAAAAGAAGATTCC 4646834
Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA 11790
| ||| | ||| ||||| || |||||||||
Sbjct 4646833 TTTCACGGTGTCAAGGGCTACAACATGTTCTCCATA 4646798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468343709308240
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