Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1345 288 1e-72 seq498 242 5e-59 seq30 149 8e-31 seq657 131 2e-25 seq184 105 9e-18 seq78 95.1 2e-14 >seq1345 Length=786133 Score = 288 bits (318), Expect = 1e-72 Identities = 591/876 (67%), Gaps = 41/876 (5%) Strand=Plus/Minus Query 35869 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 35928 |||||| || ||||| | || || || || || || || | ||||| ||| |||||||| Sbjct 221205 TTGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTC 221146 Query 35929 CATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 35988 |||||| || |||| ||| || || |||| || ||||| |||| || |||| Sbjct 221145 CATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCATCAG 221086 Query 35989 TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 36048 || || | |||||||| || || ||||||| | | ||||| || ||||| || Sbjct 221085 CCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCTT 221026 Query 36049 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 36108 || || | ||| | || || || || || || || | || | | ||||| | Sbjct 221025 CACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCAT---TCATAATT-A 220970 Query 36109 TATTACTGTTTCTTCACTC----GG--TGGATACAATAAATGTTTAAACATCAAACATGC 36162 | ||||| ||| ||| || || ||| | || || ||||||| || || Sbjct 220969 TTTTACTTACTCTCTGCTCCTATGGCTTGTGTACCAGG--TGCTTGAACATCAGGCAGGC 220912 Query 36163 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 36222 || || || |||| ||||| ||||| || || | || |||||||| || || ||||| Sbjct 220911 AAAGTCACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGG 220852 Query 36223 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 36282 ||| || || ||||| || ||||| ||||| || ||||| || ||||||||||| || || Sbjct 220851 CATAAGTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCC 220792 Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTT 36342 ||| || || |||||||| | || | ||||||| ||||| || | | Sbjct 220791 TTCCACGGCGGCAAAGGCCACAACACATTCTCCAT-------------ATGTAGCC-CCT 220746 Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||| |||| | || || |||||||| | || |||||||| |||||||| Sbjct 220745 TTGTCCCCAGT--GC---------AACGCAAGGCATCTTTTCAATAGCATTGAAGAGATA 220697 Query 36403 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 36462 | | || || ||||||| |||| ||||| | ||||| |||||||| ||||| Sbjct 220696 CTCCCTCTCCTTGGAATCTTTA----ATGTGTCAATAAGGAGACTGTACATTTCAGAATG 220641 Query 36463 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 36522 || ||||| ||| | ||||| || || |||||||| | |||| || | || ||||| Sbjct 220640 TATATTTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTC 220581 Query 36523 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 36582 | | ||| ||| | || || ||||| ||||| | |||||| |||||||| || || Sbjct 220580 TTGGCTGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGC 220521 Query 36583 CAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATC 36642 | ||||| ||||| || | | || | ||| | || | ||| | | ||||| Sbjct 220520 CCGAACATGAGGTATAACATGTCTCTCACTGGGTTTCAGAGCTTCCCAGTACTGAATATC 220461 Query 36643 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 36702 || || | ||||| || || | |||||||| || ||||| | || || ||||| | Sbjct 220460 CTTGGAAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACATCTG 220401 Query 36703 CCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 |||||| ||||| |||| || ||||| || ||||| Sbjct 220400 CCAGATATCATGGTATTTGATGGGAAAGATGACAAA 220365 >seq498 Length=2542268 Score = 242 bits (268), Expect = 5e-59 Identities = 620/941 (66%), Gaps = 71/941 (8%) Strand=Plus/Plus Query 35806 GTTTCTTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGA----GACATAACTC 35861 |||| ||| |||||| |||| | | ||||| ||| ||| |||| ||||| || | Sbjct 2186306 GTTTACTTAGAAATCAGCATCCAAGGTAAAATAATTCTCTG-TTGAACTCGACATCAC-C 2186363 Query 35862 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATA 35921 |||| | ||||| || || | || || || || || | || || ||||||| ||| | Sbjct 2186364 CCATCCTCTGGTACTCGCCT-CTCGCTTCTCAAAGAAGCTGGTCTTTCCTTCTAGTGAAA 2186422 Query 35922 TATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAG 35981 ||||||||||||| | |||||||| || ||| || Sbjct 2186423 TATTTTCCATGAAGTGAAATGGATTCTCTAC------------TTTGAA----------- 2186459 Query 35982 AAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA 36041 ||||| || ||||| ||||| || || || ||||||| || ||||| || | Sbjct 2186460 -AATCAGCCTGTCTGCCACAAACTCGATGTACTGCTTCATCAGAGTGCAGTTCATCCCGA 2186518 Query 36042 TAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 36101 | || || || || | ||| | ||||| || | || || || || |||| | | Sbjct 2186519 TGAGCTTCACAGGCAAGGCCTCCGTAAGGAACTTCTGCTCTATCCTCACTGCGT---TGA 2186575 Query 36102 TAATAGATATTACTGTT----TCTTCACTCGGTGGATACAATAAA---TGTTTAAACATC 36154 ||| |||| || || ||| | | || ||| | || || || |||||| Sbjct 2186576 CAAT---TATTTCTTTTACCCTCTGCTC-CGATGGCTTGTGTACCAGGTGCTTGAACATC 2186631 Query 36155 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 36214 | || || || || ||||||| ||||||||||| || || | || |||||||| || Sbjct 2186632 AGGCAGGCAAAGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCATTGGAAAATGTA 2186691 Query 36215 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 36274 || |||||||| || || |||| || ||||| ||||| || | || || || ||| Sbjct 2186692 AGGCCGGGCATCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAAGAACCG---AAG 2186748 Query 36275 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCA 36331 || || ||||| || || |||||||| | || | |||| || | | | |||| Sbjct 2186749 AAGATGCCTTCCACGGCGGCAAAGGCGACAACACGTTCTCTGTATGTAGCCTCTTTGTCC 2186808 Query 36332 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCA 36391 ||||| ||||| ||||||||||| || ||| ||||||| || ||||||||| Sbjct 2186809 CAAATCCAACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATCGTTTCTATAGCA 2186868 Query 36392 TTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATAC 36451 | |||||||| | | || ||| |||||||| || || ||||| | ||||| ||| Sbjct 2186869 ATGAAGAGATACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATAAGGAGACTGTAC 2186928 Query 36452 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTA 36511 ||||| ||||| |||||||| ||||| ||||| || || |||||||| | ||||| || Sbjct 2186929 ATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTG 2186988 Query 36512 ATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 36571 | || |||||| | |||||| | | || || ||||| ||||| | |||||| ||| Sbjct 2186989 ACTTGAACTTCTTGGCTAAATCGCT---CCAAGTTCTCATTGACTATGCTGTCACTCGCT 2187045 Query 36572 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAA 36631 || || || || || || |||||||| | | || | ||| | || ||| Sbjct 2187046 GCGAAGAAAGCACGAACGTGAGGTATAAAATGTCTCTC-CTGGGTTTCAGAGCTCCCCAG 2187104 Query 36632 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 36691 | | ||||||||| || | || ||||| || ||||| || || Sbjct 2187105 TGCTGGATATCTTTGGA----------------AAGGTTCAAAAGGAGGCCTCCGCTTTC 2187148 Query 36692 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 || ||||| | |||||| ||||| |||| || ||||| || Sbjct 2187149 TTGTACATGTGCCAGATATCATGGTATTTGATGGGAAACAT 2187189 >seq30 Length=10348747 Score = 149 bits (164), Expect = 8e-31 Identities = 130/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 9260 CAGATGCAAGAACAGATTGATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTC 9319 ||| |||| ||||||||||||||| |||||||||| | |||| | |||| ||||| || Sbjct 7439108 CAGGTGCAGGAACAGATTGATGATGTCCAAGTAGAGACTGATGGCAGCTAGTACATACTC 7439167 Query 9320 TTCAGGCGAGAGCTTATGTATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATAC 9379 |||||| || || | || || || ||||| ||||||||||| |||||||| ||||| | Sbjct 7439168 TTCAGGAGACAGTCTGTGCATCAGCGAGTGGGTGTCATAGATGATGAATCCACAGAAAAG 7439227 Query 9380 AAGGGCCCCAAAAGCAGACAGGACCAGCTCCACTGTTTCACT 9421 |||||| || | || ||||| || |||||||| |||||||| Sbjct 7439228 AAGGGCGCCCAGAGAAGACAAGAGCAGCTCCAAGGTTTCACT 7439269 Score = 140 bits (154), Expect = 4e-28 Identities = 106/125 (85%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| || ||||||||||||||||| ||||||||||| ||||||| |||| Sbjct 7441783 CCTGCTCCAAACTTGCTGAAATCTCTCTTTGACTGTAGAGTATAGGCAGTCAAGCCAAGG 7441842 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAACA 9599 || |||||||||||||| ||||||||||||| ||| | | ||||| |||||||||||| Sbjct 7441843 AAGACTGCAGTAGTCAGTATGAAAGCTTGCAGAACCAGGTACACATTATAGAAAGTAACT 7441902 Query 9600 ACAGA 9604 |||| Sbjct 7441903 GCAGA 7441907 Score = 89.7 bits (98), Expect = 7e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||||||| ||||| |||||||| ||||||| ||||||||||| ||||||| Sbjct 7457005 CCATGCGGATGTGCACGCTGGCCGACGCCACGCAGCTGCCGTAGTTGAAGTCATCCTCGA 7457064 Query 9907 TGGAGGAGC 9915 ||||||||| Sbjct 7457065 TGGAGGAGC 7457073 >seq657 Length=1571634 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| || || |||||||| || ||||||||||| ||||| | Sbjct 954656 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 954597 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 954596 GACTCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAA 954537 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 954536 CTGTTTCTTACACCATA 954520 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || ||||||||||| |||||| ||| | || || || |||||||| | Sbjct 957729 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 957670 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 957669 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCTGCCATCTTGAGAACAGTCT 957610 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | || ||||| | | |||| | || || |||| Sbjct 957609 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 957559 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 935527 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 935468 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || ||||| | ||||| | || || ||| | || || |||||||| |||| Sbjct 935467 TGGCATAGTCAGGATGCTTCGTAGTCAAGGTTGCCGCTGTCTCTGCAGCCAGAGTATCCA 935408 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 935407 GTTCCACTGTGGTGACCCCACTGTACAGGCCTTGGATTACTTTCAT 935362 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||| ||||| |||||||| ||||||||||| || | || | ||| | || || Sbjct 947915 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 947856 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || || ||||||||||| || | || |||||| | | || || | ||||| Sbjct 947855 CTGCTCTTCCTTCCCTGTATTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 947796 Query 66176 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 66208 || |||| ||| || || | ||||||| || Sbjct 947795 AGGCTCCAGGTAAATAGCAAATGCTCCAGGGCG 947763 >seq184 Length=3314118 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| || || || || | || || ||||| |||||||||||||| ||||| | ||| | Sbjct 1994076 CCTCATCCCTGCTGATGAGCTCATTTGAAAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 1994135 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| | |||||||| ||||| |||||||| ||||| || || || |||| Sbjct 1994136 TCAGCCAGAATATAGCAGCAAATGACCCAGAGAAGAAAATGCCTTCCACGGCGGCGAAGG 1994195 Query 36300 CAATAAGTCTCTCTCC 36315 | | | |||||| || Sbjct 1994196 CCACCACTCTCTCCCC 1994211 >seq78 Length=6419775 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/145 (75%), Gaps = 5/145 (3%) Strand=Plus/Plus Query 35806 GTTTCTTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGA----GACATAACTC 35861 |||| ||| |||||| |||| | | |||| ||| ||| |||| ||||| || | Sbjct 5583561 GTTTACTTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCC 5583619 Query 35862 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATA 35921 |||| | |||||||| ||||| || || || || || || || || ||||||| ||| | Sbjct 5583620 CCATCCTCTGGTATTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 5583679 Query 35922 TATTTTCCATGAAATCGAATGGATT 35946 ||||||||||||| || |||||||| Sbjct 5583680 TATTTTCCATGAAGTCAAATGGATT 5583704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657918407985640