Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq457 138 1e-27 seq6307 84.2 2e-11 seq144 84.2 2e-11 >seq457 Length=2943904 Score = 138 bits (152), Expect = 1e-27 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| || |||| || || || ||||| ||||||||||||||||| | Sbjct 1188166 TCAGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTAAAGG 1188225 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||| |||||| |||||||| ||||||||||| Sbjct 1188226 GCACGCCCAGGCCCATGTCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCA 1188285 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || |||||||| | | || || ||||| || |||||| Sbjct 1188286 CCACATAGAACTGACAGAGGGCATGGCAGGGAGGCAGTGCCATC 1188329 >seq6307 Length=6747 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || ||||||||||||| | | ||| || ||||| ||||| ||||| Sbjct 2091 TCTCTGCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 2150 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAA 3128 ||||| ||| | |||||||| |||| ||||| || |||||||| Sbjct 2151 AACCAGGTTTTCCGGCCCATAATCACCAGATTCTGTTTACCTACAA 2196 >seq144 Length=4920231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || ||||||||||||| | | ||| || ||||| ||||| ||||| Sbjct 4541631 TCTCTGCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 4541572 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAA 3128 ||||| ||| | |||||||| |||| ||||| || |||||||| Sbjct 4541571 AACCAGGTTTTCCGGCCCATAATCACCAGATTCTGTTTACCTACAA 4541526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427614792748080