Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq1345 113 3e-20 >seq1345 Length=786133 Score = 113 bits (124), Expect = 3e-20 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| || || |||||| || | |||||||| || ||||| | |||||||||| Sbjct 220772 TGGCCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGC 220831 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 ||||||| || || ||||| || | | |||||||| ||| | || ||| | || | Sbjct 220832 TGAAGAAGCGGGGACTTATGCCCGGCCTTACATTTTCCAATGAGCTTATCAGCAGAGATG 220891 Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 | || |||| ||||||||||| || || |||| | ||| ||| | |||| || Sbjct 220892 AGGGCTTACATTGTGACTTTGCCTGCCTGATGTTCAAGCACCTGGTACACAAGCC 220946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356099353479163