Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1345 300 2e-76 seq498 257 2e-63 seq657 122 1e-22 seq184 120 4e-22 seq78 91.5 2e-13 seq442 84.2 3e-11 >seq1345 Length=786133 Score = 300 bits (332), Expect = 2e-76 Identities = 590/871 (68%), Gaps = 31/871 (4%) Strand=Plus/Minus Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730 |||||| || ||||| | || || || || || || |||| ||| | ||| |||||||| Sbjct 221205 TTGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTC 221146 Query 49731 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 49790 |||||| ||||| | ||| || || |||| || ||||| |||| || |||| Sbjct 221145 CATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCATCAG 221086 Query 49791 TCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 49850 || ||| | |||||||| || || ||||||| | | ||||| || ||||| || Sbjct 221085 CCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCTT 221026 Query 49851 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 49910 || || | ||| | || || || || || || || | |||| | || || Sbjct 221025 CACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTATTTT 220966 Query 49911 TCTAACGGTTT-CTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAAT 49969 || || | | || | | | | | || | | || || ||||||| || || || | Sbjct 220965 ACTTACTCTCTGCTCCTATGGCTTG-TGTACCAGGTGCTTGAACATCAGGCAGGCAAAGT 220907 Query 49970 CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTA 50029 | || || | ||||| ||||| || || || || |||||||| || || |||||||| | Sbjct 220906 CACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATAA 220847 Query 50030 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTA 50089 | || ||||| || ||||| ||||| || ||||| || |||||||||||||| ||||| | Sbjct 220846 GTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCA 220787 Query 50090 CTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTTTGAG 50149 | ||||||||||| |||| | ||||||| ||||| || | |||| Sbjct 220786 CGGCGGCAAAGGCCACAACACATTCTCCAT-------------ATGTAGCC-CCTTTGTC 220741 Query 50150 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 50209 |||| | || || ||||||||| |||| || ||||| |||||||| | Sbjct 220740 CCCAGT--GC---------AACGCAAGGCATCTTTTCAATAGCATTGAAGAGATACTCCC 220692 Query 50210 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 | || || ||||||| | || || || | ||||| |||||||| ||||| || | Sbjct 220691 TCTCCTTGGAATCTTTA----ATGTGTCAATAAGGAGACTGTACATTTCAGAATGTATAT 220636 Query 50270 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 50329 |||| ||| | || || || || |||||||| | |||| || | || |||||| | Sbjct 220635 TTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTCTTGGC 220576 Query 50330 AAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 50389 ||| ||| | || || ||||| ||||| | |||||| |||||||| || ||| | Sbjct 220575 TGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGCCCGAA 220516 Query 50390 CATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAG 50449 |||| ||||| |||| | || ||||| | || | ||| | | ||||| || | Sbjct 220515 CATGAGGTATAACATGTCTCTCACTGGGTTTCAGAGCTTCCCAGTACTGAATATCCTTGG 220456 Query 50450 ATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGA 50509 | | || || || || | |||||||| || ||||| | || || ||||| | ||||| Sbjct 220455 AAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACATCTGCCAGA 220396 Query 50510 TGTCATGATATTGGATTGGGAAAATAACAAA 50540 | ||||| |||| ||| || || || ||||| Sbjct 220395 TATCATGGTATTTGATGGGAAAGATGACAAA 220365 >seq498 Length=2542268 Score = 257 bits (284), Expect = 2e-63 Identities = 412/591 (70%), Gaps = 27/591 (5%) Strand=Plus/Plus Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 || || ||||||| || || || || ||||| | ||||||||||| || || || || Sbjct 2186620 TGCTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCA 2186679 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 |||||||| || || |||||||| || || |||| || ||||| ||||| || | || Sbjct 2186680 TTGGAAAATGTAAGGCCGGGCATCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAA 2186739 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124 || || |||||||| ||||| || ||||||||||| |||| | |||| || | Sbjct 2186740 GAACCG---AAGAAGATGCCTTCCACGGCGGCAAAGGCGACAACACGTTCTCTGTATGTA 2186796 Query 50125 GCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 50181 || |||| ||||| ||||| ||||||||||| || ||| |||||||| Sbjct 2186797 GCCTCTTTGTCCCAAATCCAACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATC 2186856 Query 50182 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 50241 |||||||| ||| | |||||||| | | || ||| |||||||| || || || || Sbjct 2186857 GTTTCTATAGCAATGAAGAGATACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATA 2186916 Query 50242 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 50301 | ||||| |||||||| ||||| |||||||| ||||| || || || || |||||||| Sbjct 2186917 AGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 2186976 Query 50302 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATT 50361 | ||||| || | || |||||| | |||||| | | || || ||||| ||||| Sbjct 2186977 CGGGCCTCTGTGACTTGAACTTCTTGGCTAAATCGCT---CCAAGTTCTCATTGACTATG 2187033 Query 50362 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT 50421 | |||||| ||||| || || || || || |||||||||| | || ||||| | Sbjct 2187034 CTGTCACTCGCTGCGAAGAAAGCACGAACGTGAGGTATAAAATGTCTCTC-CTGGGTTTC 2187092 Query 50422 AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGAT 50481 || ||| | | ||||||||| || | || ||||| || Sbjct 2187093 AGAGCTCCCCAGTGCTGGATATCTTTGGA----------------AAGGTTCAAAAGGAG 2187136 Query 50482 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAA 50532 ||||| || || || ||||| | |||||| ||||| |||| || ||||||| Sbjct 2187137 GCCTCCGCTTTCTTGTACATGTGCCAGATATCATGGTATTTGA-TGGGAAA 2187186 >seq657 Length=1571634 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| || || |||||||| || ||||||||||| ||||| | Sbjct 954656 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 954597 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| ||| ||||||||||| || || ||||| || || | | |||| Sbjct 954596 GACTCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAA 954537 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 954536 CTGTTTCTTACACCATA 954520 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| ||||||||||| |||||| ||| | || || || |||||||| | Sbjct 957729 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 957670 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 957669 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCTGCCATCTTGAGAACAGTCT 957610 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | || ||||| | | |||| | || || |||| Sbjct 957609 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 957559 Score = 100 bits (110), Expect = 4e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || ||||||||||| || | || | |||| ||||| || || || || ||||| ||| Sbjct 951251 TACGTTTCATAAGGGCCATACTCCTTTGCTAGGTCACAGCTGGCTTCCAAAGCTCCATAA 951192 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||| ||||| || |||| |||||| | || |||||| |||| ||||| || || Sbjct 951191 TAAATAGTTTCAAAGATCTGCTTATTCAATAACTGGGCTTCTGGGCTCTCAAAGGGGTAT 951132 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | || || || || ||||||| ||||| || ||||| || || || | ||| | Sbjct 951131 CTCATCAGGATGAAAGCATCTGCTAGACCTTGTACTCCAATTCCAATGGGCCGATGGCGT 951072 Query 79480 TTATTAGA 79487 ||||| || Sbjct 951071 TTATTGGA 951064 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| |||||||| ||||||||||| || | || ||||| | || || ||| Sbjct 947911 ACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGC 947852 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || || ||||||||||| || | || |||||| | | || || | ||||| || Sbjct 947851 TCTTCCTTCCCTGTATTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGC 947792 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 947791 TCCAGGTAAATAGC 947778 >seq184 Length=3314118 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || || || || || || ||||| |||||||||||||| ||||| | ||| | Sbjct 1994076 CCTCATCCCTGCTGATGAGCTCATTTGAAAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 1994135 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| | |||||||||||||| ||||| || ||||| || ||||| |||| Sbjct 1994136 TCAGCCAGAATATAGCAGCAAATGACCCAGAGAAGAAAATGCCTTCCACGGCGGCGAAGG 1994195 Query 50102 CAACAAGTCTCTCTCC 50117 | || | |||||| || Sbjct 1994196 CCACCACTCTCTCCCC 1994211 >seq78 Length=6419775 Score = 91.5 bits (100), Expect = 2e-13 Identities = 108/145 (74%), Gaps = 5/145 (3%) Strand=Plus/Plus Query 49608 GTTTCTTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA----GACATAACTC 49663 |||| ||| || ||| |||| | | |||| ||| ||| |||| ||||| || | Sbjct 5583561 GTTTACTTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCC 5583619 Query 49664 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 49723 |||| | |||||||| ||||| || || || || || || || |||||||| | ||| | Sbjct 5583620 CCATCCTCTGGTATTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 5583679 Query 49724 TATTTTCCATGAAATCAAACGGATT 49748 ||||||||||||| ||||| ||||| Sbjct 5583680 TATTTTCCATGAAGTCAAATGGATT 5583704 >seq442 Length=2622005 Score = 84.2 bits (92), Expect = 3e-11 Identities = 229/345 (66%), Gaps = 17/345 (5%) Strand=Plus/Plus Query 183108 TTTGCCAACACGGATGGTGGATATTTGTTCATTGGAGTTGAT-AATAATACACACAAAGT 183166 ||||||||||| ||||| ||||||||||||||||| | ||| || || | | |||| | Sbjct 2595170 TTTGCCAACACTGATGGAGGATATTTGTTCATTGGTTTGGATGAAAAAAAAAAGCAAATT 2595229 Query 183167 AGTTGGATTCACGGTGGGTCAAGACTACCTCAAACTGGTAGAGAGTGATATAGAAAAGTA 183226 | ||| || | | | | | || | || | | || || |||| ||||||| || Sbjct 2595230 A-CTGGTTTTAAAGCAGATGAGAACAAACTTAGGGAGCTAAAGTGTGAAATAGAAAGGTG 2595288 Query 183227 TATCAAAAGACTTCGTGTTGTGCATTTCTGTGAGAAGAAAGAGGACATCAAGTACGCGTG 183286 ||| || |||| ||| || ||||||||| |||| |||| || |||||| | || Sbjct 2595289 CATCCAACAGCTTCCTGTCACTCACTTCTGTGAGGAGAAGCAGGAGATAAAGTACACATG 2595348 Query 183287 TCGATTCATCAAGGTGTATAAACCTGGGGAGGAGACTACCTCGACATACGTGTGCGCTAT 183346 ||| ||| || ||| | | || ||| | || || || || || | Sbjct 2595349 CAAATTTATCCCAGTCAGCAAATCAGAAGATGAGTGTTCC------TATGTCTGTGCACT 2595402 Query 183347 CAAAGTGGAAAGATGCTGCTGTGCCGTGTT---TGCAGATTGGCCAGAATCATGGTACAT 183403 || |||||| |||| ||||||||| ||||| |||||| ||| || || ||| ||| Sbjct 2595403 CAGAGTGGAGAGATTCTGCTGTGCTGTGTTCGCTGCAGA---GCCTGATTCCTGG--CAT 2595457 Query 183404 GGATACTAGTGGTAGTATGAAGAAGTATTCTCCAGATGAATGGGT 183448 | | | | | || |||||| || | | |||| |||||||| Sbjct 2595458 GTTGAAGACAGCT-GTGTGAAGAGGTTTACCACAGAGGAATGGGT 2595501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717991180130440