Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq498 179 4e-40
seq1345 136 4e-27
seq78 86.0 6e-12
seq184 84.2 2e-11
>seq498
Length=2542268
Score = 179 bits (198), Expect = 4e-40
Identities = 308/446 (69%), Gaps = 6/446 (1%)
Strand=Plus/Plus
Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913
|| || || || || | || ||||| ||||| || | |||||| ||||| || |||||
Sbjct 2186617 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGC 2186676
Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973
|| || |||||||| | || ||||||| ||| | || || | ||| ||||||| |
Sbjct 2186677 TCATTGGAAAATGTAAGGCCGGGCATCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTG 2186736
Query 13974 AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14033
|| || ||| ||||| || || || || || ||||| || | | ||||||| |
Sbjct 2186737 AAAGAACCG---AAGAAGATGCCTTCCACGGCGGCAAAGGCGACAACACGTTCTCTGTAT 2186793
Query 14034 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14093
| || | ||||| | | ||||| ||||| || | || || || | | || |
Sbjct 2186794 GTAGCCTCTTTGTCCCAAATCCAACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGC 2186853
Query 14094 ATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCA 14153
|| ||||| |||||| | || | ||| ||| |||| |||| | | |||||| || |||
Sbjct 2186854 ATCGTTTCTATAGCAATGAAGAGATACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCA 2186913
Query 14154 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAG 14213
||||| | || ||||||||||| |||||||||||||| || || || || ||||| ||
Sbjct 2186914 ATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAA 2186973
Query 14214 CATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACT 14273
|| | || || | ||| ||||| | ||||| | |||| || ||||| |||
Sbjct 2186974 CAGCGGGCCTCTGTGACTTGAACTTCTTGGCTAAATCGCT---CCAAGTTCTCATTGACT 2187030
Query 14274 ATACCATCACTAGCTGCAAAAAATGC 14299
|| | ||||| ||||| || || ||
Sbjct 2187031 ATGCTGTCACTCGCTGCGAAGAAAGC 2187056
>seq1345
Length=786133
Score = 136 bits (150), Expect = 4e-27
Identities = 552/864 (64%), Gaps = 52/864 (6%)
Strand=Plus/Minus
Query 13602 TTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661
|| ||||||||||| || || | ||| ||||| ||||||||||| || ||||||| ||||
Sbjct 221186 TTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTCCATGAAGTCAAATGAATTT 221127
Query 13662 ATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCA 13721
| | || | || | | | || || || | | | || || | | ||| |||
Sbjct 221126 TCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCATCAGCCTGTCCACCACAAATTCA 221067
Query 13722 ATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTT 13781
|| || || ||| | || | ||||| || || || || ||||| | | ||
Sbjct 221066 ATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCTTCACAGGCAAGGCCTCCGTG 221007
Query 13782 AAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAA---TCTCATTA 13838
| || || | ||||| || || | | ||||| ||| || | | ||| |
Sbjct 221006 AGGAACTCCTGCTCTATCCTCATGGCAT---TCATAATTATTTTACTTACTCTCTGCTCC 220950
Query 13839 GAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCA 13898
| || | | || || || || || | || ||||| |||||||| | |||||||
Sbjct 220949 TATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGTCACAATGTAAGCCCTCA 220890
Query 13899 TCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAAC 13958
||||| || ||||| || || |||||||| | || ||||| | ||| || || || | |
Sbjct 220889 TCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATAAGTCCCCGCTTCTTCAGC 220830
Query 13959 CAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATT 14018
|| ||||||| ||||| || || |||||||| || || || || || ||||| || |
Sbjct 220829 CAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGGCCACA 220770
Query 14019 AATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttt 14078
| | ||||||| | | || ||||| ||| |||
Sbjct 220769 ACACATTCTCCATATGTAGCCCCTTTGT------------------CCC---CAG----- 220736
Query 14079 tttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTA-CT 14137
| || || ||| ||||||||||||| || | ||| ||| |||| || | | ||
Sbjct 220735 --TGCAACGCAAGGCATCTTTTCAATAGCATTGAAGAGATACTCCCTCTCCTTGGAATCT 220678
Query 14138 TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTAT 14197
| | |||| |||||||| | || ||||||||||| ||||| ||||| || | ||
Sbjct 220677 TTA-----ATGTGTCAATAAGGAGACTGTACATTTCAGAATGTATATTTTCTATGCCAAT 220623
Query 14198 CTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGC 14257
|| || ||||| || || | | || | ||| ||||| | ||| || |
Sbjct 220622 TTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTCTTGGCTGAATAGTTTCAC 220563
Query 14258 CAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AATATGTTTTTAATA 14315
||| || ||||| ||||| | ||||| |||||||| || ||| || ||| | |||
Sbjct 220562 CAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGCCCGAACATGAGGT--ATA 220505
Query 14316 AAGTATTGCTCTTCATTG---TTGAGTTTTTTCCAAT-CGGATAAATCCTTAGAAAGATC 14371
| || ||| ||| || || || || ||| | | || | |||||| ||||| ||
Sbjct 220504 A--CATGTCTC-TCACTGGGTTTCAGAGCTTCCCAGTACTGA-ATATCCTTGGAAAGGTC 220449
Query 14372 TACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTT 14431
|| || ||| | |||||||| || || |||| || ||||| ||| || || |
Sbjct 220448 CACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACATCTGCCAGATATCATG 220389
Query 14432 ATATAATATAGGAAAAACTACAAA 14455
||| || ||||| | |||||
Sbjct 220388 GTATTTGATGGGAAAGATGACAAA 220365
>seq78
Length=6419775
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583
|| |||||| |||| || | |||| ||| || | | || || || ||||| |
Sbjct 5583568 TAGAAATCAGCATCCAAGGTAAAAGAATTCTCTGTTGAACTCGACATCACCCCCATCCTC 5583627
Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643
|| ||||| | |||| || ||||||||||| || || ||||| ||||| |||||||||
Sbjct 5583628 TGGTATTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTTCC 5583687
Query 13644 ATAAAATCAAATGGATT 13660
|| || |||||||||||
Sbjct 5583688 ATGAAGTCAAATGGATT 5583704
>seq184
Length=3314118
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
||||||| || || || || || |||||||| || | ||| ||||| | |||| || |
Sbjct 1994076 CCTCATCCCTGCTGATGAGCTCATTTGAAAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 1994135
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| | ||| ||||| |||||||||||||| || ||||| || || || || || || || |
Sbjct 1994136 TCAGCCAGAATATAGCAGCAAATGACCCAGAGAAGAAAATGCCTTCCACGGCGGCGAAGG 1994195
Query 14014 C 14014
|
Sbjct 1994196 C 1994196
Score = 82.4 bits (90), Expect = 7e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643
||||| ||| ||||| ||| |||||||| || ||||| ||||| | ||| || ||||||
Sbjct 1986884 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 1986943
Query 13644 ATAAAATCAAATGGATTT 13661
||||||||||| ||||||
Sbjct 1986944 ATAAAATCAAAGGGATTT 1986961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479542579131400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |