Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq498 179 4e-40 seq1345 136 4e-27 seq78 86.0 6e-12 seq184 84.2 2e-11 >seq498 Length=2542268 Score = 179 bits (198), Expect = 4e-40 Identities = 308/446 (69%), Gaps = 6/446 (1%) Strand=Plus/Plus Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913 || || || || || | || ||||| ||||| || | |||||| ||||| || ||||| Sbjct 2186617 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGC 2186676 Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973 || || |||||||| | || ||||||| ||| | || || | ||| ||||||| | Sbjct 2186677 TCATTGGAAAATGTAAGGCCGGGCATCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTG 2186736 Query 13974 AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14033 || || ||| ||||| || || || || || ||||| || | | ||||||| | Sbjct 2186737 AAAGAACCG---AAGAAGATGCCTTCCACGGCGGCAAAGGCGACAACACGTTCTCTGTAT 2186793 Query 14034 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14093 | || | ||||| | | ||||| ||||| || | || || || | | || | Sbjct 2186794 GTAGCCTCTTTGTCCCAAATCCAACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGC 2186853 Query 14094 ATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCA 14153 || ||||| |||||| | || | ||| ||| |||| |||| | | |||||| || ||| Sbjct 2186854 ATCGTTTCTATAGCAATGAAGAGATACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCA 2186913 Query 14154 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAG 14213 ||||| | || ||||||||||| |||||||||||||| || || || || ||||| || Sbjct 2186914 ATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAA 2186973 Query 14214 CATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACT 14273 || | || || | ||| ||||| | ||||| | |||| || ||||| ||| Sbjct 2186974 CAGCGGGCCTCTGTGACTTGAACTTCTTGGCTAAATCGCT---CCAAGTTCTCATTGACT 2187030 Query 14274 ATACCATCACTAGCTGCAAAAAATGC 14299 || | ||||| ||||| || || || Sbjct 2187031 ATGCTGTCACTCGCTGCGAAGAAAGC 2187056 >seq1345 Length=786133 Score = 136 bits (150), Expect = 4e-27 Identities = 552/864 (64%), Gaps = 52/864 (6%) Strand=Plus/Minus Query 13602 TTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 || ||||||||||| || || | ||| ||||| ||||||||||| || ||||||| |||| Sbjct 221186 TTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTCCATGAAGTCAAATGAATTT 221127 Query 13662 ATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCA 13721 | | || | || | | | || || || | | | || || | | ||| ||| Sbjct 221126 TCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCATCAGCCTGTCCACCACAAATTCA 221067 Query 13722 ATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTT 13781 || || || ||| | || | ||||| || || || || ||||| | | || Sbjct 221066 ATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCTTCACAGGCAAGGCCTCCGTG 221007 Query 13782 AAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAA---TCTCATTA 13838 | || || | ||||| || || | | ||||| ||| || | | ||| | Sbjct 221006 AGGAACTCCTGCTCTATCCTCATGGCAT---TCATAATTATTTTACTTACTCTCTGCTCC 220950 Query 13839 GAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCA 13898 | || | | || || || || || | || ||||| |||||||| | ||||||| Sbjct 220949 TATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGTCACAATGTAAGCCCTCA 220890 Query 13899 TCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAAC 13958 ||||| || ||||| || || |||||||| | || ||||| | ||| || || || | | Sbjct 220889 TCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATAAGTCCCCGCTTCTTCAGC 220830 Query 13959 CAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATT 14018 || ||||||| ||||| || || |||||||| || || || || || ||||| || | Sbjct 220829 CAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGGCCACA 220770 Query 14019 AATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttt 14078 | | ||||||| | | || ||||| ||| ||| Sbjct 220769 ACACATTCTCCATATGTAGCCCCTTTGT------------------CCC---CAG----- 220736 Query 14079 tttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTA-CT 14137 | || || ||| ||||||||||||| || | ||| ||| |||| || | | || Sbjct 220735 --TGCAACGCAAGGCATCTTTTCAATAGCATTGAAGAGATACTCCCTCTCCTTGGAATCT 220678 Query 14138 TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTAT 14197 | | |||| |||||||| | || ||||||||||| ||||| ||||| || | || Sbjct 220677 TTA-----ATGTGTCAATAAGGAGACTGTACATTTCAGAATGTATATTTTCTATGCCAAT 220623 Query 14198 CTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGC 14257 || || ||||| || || | | || | ||| ||||| | ||| || | Sbjct 220622 TTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTCTTGGCTGAATAGTTTCAC 220563 Query 14258 CAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AATATGTTTTTAATA 14315 ||| || ||||| ||||| | ||||| |||||||| || ||| || ||| | ||| Sbjct 220562 CAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGCCCGAACATGAGGT--ATA 220505 Query 14316 AAGTATTGCTCTTCATTG---TTGAGTTTTTTCCAAT-CGGATAAATCCTTAGAAAGATC 14371 | || ||| ||| || || || || ||| | | || | |||||| ||||| || Sbjct 220504 A--CATGTCTC-TCACTGGGTTTCAGAGCTTCCCAGTACTGA-ATATCCTTGGAAAGGTC 220449 Query 14372 TACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTT 14431 || || ||| | |||||||| || || |||| || ||||| ||| || || | Sbjct 220448 CACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACATCTGCCAGATATCATG 220389 Query 14432 ATATAATATAGGAAAAACTACAAA 14455 ||| || ||||| | ||||| Sbjct 220388 GTATTTGATGGGAAAGATGACAAA 220365 >seq78 Length=6419775 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 || |||||| |||| || | |||| ||| || | | || || || ||||| | Sbjct 5583568 TAGAAATCAGCATCCAAGGTAAAAGAATTCTCTGTTGAACTCGACATCACCCCCATCCTC 5583627 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 || ||||| | |||| || ||||||||||| || || ||||| ||||| ||||||||| Sbjct 5583628 TGGTATTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTTCC 5583687 Query 13644 ATAAAATCAAATGGATT 13660 || || ||||||||||| Sbjct 5583688 ATGAAGTCAAATGGATT 5583704 >seq184 Length=3314118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||| || || || || || |||||||| || | ||| ||||| | |||| || | Sbjct 1994076 CCTCATCCCTGCTGATGAGCTCATTTGAAAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 1994135 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| |||||||||||||| || ||||| || || || || || || || | Sbjct 1994136 TCAGCCAGAATATAGCAGCAAATGACCCAGAGAAGAAAATGCCTTCCACGGCGGCGAAGG 1994195 Query 14014 C 14014 | Sbjct 1994196 C 1994196 Score = 82.4 bits (90), Expect = 7e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| ||| ||||| ||| |||||||| || ||||| ||||| | ||| || |||||| Sbjct 1986884 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 1986943 Query 13644 ATAAAATCAAATGGATTT 13661 ||||||||||| |||||| Sbjct 1986944 ATAAAATCAAAGGGATTT 1986961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479542579131400