Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq498 174 2e-38 seq1345 127 2e-24 >seq498 Length=2542268 Score = 174 bits (192), Expect = 2e-38 Identities = 307/446 (69%), Gaps = 6/446 (1%) Strand=Plus/Plus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 || || || || || | || ||||| ||||| || | |||||| ||||| || ||||| Sbjct 2186617 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGC 2186676 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 || || |||||||| | || ||||||| ||| | || || | ||| ||||||| | | Sbjct 2186677 TCATTGGAAAATGTAAGGCCGGGCATCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTG 2186736 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821 || || ||| ||||| || || || || || ||||| || | | ||||||| | Sbjct 2186737 AAAGAACCG---AAGAAGATGCCTTCCACGGCGGCAAAGGCGACAACACGTTCTCTGTAT 2186793 Query 13822 GATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 13881 | || | ||||| | ||||| ||||| || | || || || | | || | Sbjct 2186794 GTAGCCTCTTTGTCCCAAATCCAACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGC 2186853 Query 13882 ATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCA 13941 || ||||| || ||| |||| | || ||| |||| |||| | | |||||| || ||| Sbjct 2186854 ATCGTTTCTATAGCAATGAAGAGATACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCA 2186913 Query 13942 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA 14001 ||||| | || ||||||||||| ||||||||||| || || || || || ||||| ||| Sbjct 2186914 ATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAA 2186973 Query 14002 CATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACA 14061 || | || |||| ||| || || | ||||| | ||||||| ||||| || Sbjct 2186974 CAGCGGGCCTCTGTGACTTGAACTTCTTGGCTAAATCGCT---CCAAGTTCTCATTGACT 2187030 Query 14062 ATACCATCACTAGCTGCAAAAAATGC 14087 || | ||||| ||||| || || || Sbjct 2187031 ATGCTGTCACTCGCTGCGAAGAAAGC 2187056 >seq1345 Length=786133 Score = 127 bits (140), Expect = 2e-24 Identities = 295/448 (66%), Gaps = 34/448 (8%) Strand=Plus/Minus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 || || || || || | || ||||| |||||||| | |||||||||||| || ||||| Sbjct 220934 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAATGTAAGCCCTCATCTCTGCTGATAAGC 220875 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 || || |||||||| | || ||||| | ||| || || || | ||| ||||||| || Sbjct 220874 TCATTGGAAAATGTAAGGCCGGGCATAAGTCCCCGCTTCTTCAGCCAGAATATTGATGCA 220815 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821 || || || |||||||| || || || || || ||||| || | | | ||||||| | Sbjct 220814 AAAGAACCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGGCCACAACACATTCTCCATAT 220755 Query 13822 GATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 13881 | || ||||| ||| ||| | || || | Sbjct 220754 GTAGCCCCTTTGT------------------CCC---CAG-------TGCAACGCAAGGC 220723 Query 13882 ATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATC 13940 || |||| || |||||||| | || ||| |||| || | | ||| | |||| || Sbjct 220722 ATCTTTTCAATAGCATTGAAGAGATACTCCCTCTCCTTGGAATCTTTA-----ATGTGTC 220668 Query 13941 AATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000 |||||| | || ||||||||||| ||||| |||||||| | || || || ||||| || Sbjct 220667 AATAAGGAGACTGTACATTTCAGAATGTATATTTTCTATGCCAATTTGGAAGCCATAGAA 220608 Query 14001 ACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAAC 14060 ||| | | |||| ||| || || | ||| || ||||||| ||||| || Sbjct 220607 ACAGCGGACCTCTGTGACTTGAACTTCTTGGCTGAATAGTTTCACCAAGTTCTCATTGAC 220548 Query 14061 AATACCATCACTAGCTGCAAAAAATGCC 14088 || | ||||| |||||||| || ||| Sbjct 220547 TATGCTGTCACTTGCTGCAAAGAAAGCC 220520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478403819446440