Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1345 277 2e-69
seq498 226 4e-54
seq657 129 8e-25
seq184 111 2e-19
seq78 100 4e-16
>seq1345
Length=786133
Score = 277 bits (306), Expect = 2e-69
Identities = 587/872 (67%), Gaps = 33/872 (4%)
Strand=Plus/Minus
Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835
|||||| || ||||| | || || || || || ||||||| ||| | ||| ||||||||
Sbjct 221205 TTGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTC 221146
Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895
|||||| ||||| | ||| || || |||| || ||||| |||| || ||||
Sbjct 221145 CATGAAGTCAAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCATCAG 221086
Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955
|| || | | ||||| || || ||||||| | | ||||| || ||||| ||
Sbjct 221085 CCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCTT 221026
Query 41956 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 42015
|| || | ||| | || || || || || || || | || | | || ||
Sbjct 221025 CACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTATTTT 220966
Query 42016 TCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 42074
|||||| | | || | | | | | | | | || || ||||||| || || || |
Sbjct 220965 ACTTACTCTCTGCTCCTATGGCTTG-TGTACCAGGTGCTTGAACATCAGGCAGGCAAAGT 220907
Query 42075 CGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 42134
| || || | ||||||||||| || || | || |||||||| || || |||||||| |
Sbjct 220906 CACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATAA 220847
Query 42135 GGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTA 42194
| || ||||| || ||||| ||||| || ||||| || |||||||||||||| ||||| |
Sbjct 220846 GTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCA 220787
Query 42195 CTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAG 42254
| || |||||||| | || | |||||||| |||| || |||| |
Sbjct 220786 CGGCGGCAAAGGCCACAACACATTCTCCATA-------------TGTAGCCCCTTT-GTC 220741
Query 42255 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 42314
|||| | || || ||||||||| |||| || ||||| |||||||| |
Sbjct 220740 CCCAGT--GCA---------ACGCAAGGCATCTTTTCAATAGCATTGAAGAGATACTCCC 220692
Query 42315 tttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374
| || || |||||||| ||| || || | ||||| |||||||| ||||| || |
Sbjct 220691 TCTCCTTGGAATCTTTAA----TGTGTCAATAAGGAGACTGTACATTTCAGAATGTATAT 220636
Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC 42434
|||| ||| | || || || || |||||||| | | |||| || || || |||||| |
Sbjct 220635 TTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTCTTGGC 220576
Query 42435 AAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 42494
||| ||| | || || || || ||||| | |||||| |||||||| || ||| |
Sbjct 220575 TGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGCCCGAA 220516
Query 42495 CATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGA-TATCTTTA 42553
|||| ||||| || | | || ||| || | |||| | | ||| |||| ||
Sbjct 220515 CATGAGGTATAACATGTCTCTCACTGGGT-TTCAGAGCTTCCCAGTACTGAATATCCTTG 220457
Query 42554 GATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAG 42613
|| | || || || || |||||||||| || || || | || || ||||| | ||||
Sbjct 220456 GAAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACATCTGCCAG 220397
Query 42614 ATATCATGATATTGAATTGGGAAAATAACAAA 42645
|||||||| |||| || || || || |||||
Sbjct 220396 ATATCATGGTATTTGATGGGAAAGATGACAAA 220365
>seq498
Length=2542268
Score = 226 bits (250), Expect = 4e-54
Identities = 317/443 (72%), Gaps = 9/443 (2%)
Strand=Plus/Plus
Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109
|| || ||||||| || || || || ||||| | ||||| ||||| || || | ||
Sbjct 2186620 TGCTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCGTCTCTGCTGATAAGCTCA 2186679
Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169
|||||||| || || |||||||| || || |||| || ||||| ||||| || | ||
Sbjct 2186680 TTGGAAAATGTAAGGCCGGGCATCAGTCCCTGCTTCTTGAGCCAGAATATTGATGTGAAA 2186739
Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---A 42226
|| || |||||||| ||||| || || |||||||| | || | |||| || |
Sbjct 2186740 GAACCG---AAGAAGATGCCTTCCACGGCGGCAAAGGCGACAACACGTTCTCTGTATGTA 2186796
Query 42227 CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 42286
| | |||| ||||| ||||| ||||||||||| || ||| ||||||||
Sbjct 2186797 GCCTCTTTGTCCCAAATCCAACGCAAGGCCCAGTCGGCCTTCTTCTTCACAGAAGGCATC 2186856
Query 42287 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATC 42346
|||||||| ||| | |||||||| | | || ||| |||||||| || || || ||
Sbjct 2186857 GTTTCTATAGCAATGAAGAGATACTCCCTCTCCTTAGAATCTTTAATGTAGGTGTCAATA 2186916
Query 42347 AAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 42406
| ||||| |||||||| ||||| |||||||| ||||| || || || || ||||||||
Sbjct 2186917 AGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 2186976
Query 42407 CTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATT 42466
| |||||| || || || |||||| | |||||| | | || || || || |||||
Sbjct 2186977 CGGGCCTCTGTGACTTGAACTTCTTGGCTAAATCGCT---CCAAGTTCTCATTGACTATG 2187033
Query 42467 CCGTCACTGGCTGCAAAAAACGC 42489
| |||||| ||||| || || ||
Sbjct 2187034 CTGTCACTCGCTGCGAAGAAAGC 2187056
>seq657
Length=1571634
Score = 129 bits (142), Expect = 8e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202
|| ||||||||||| ||||| || || |||||||| || ||||||||||| ||||| |
Sbjct 954656 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 954597
Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262
||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | || |
Sbjct 954596 GACTCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAA 954537
Query 71263 CTATTTCTAAGACCAT 71278
|| ||||| | |||||
Sbjct 954536 CTGTTTCTTACACCAT 954521
Score = 105 bits (116), Expect = 9e-18
Identities = 126/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927
|||| ||||| || ||||||||||| |||||| |||| |||| || || || || || |
Sbjct 957729 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 957670
Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987
| | ||||| |||||||||||||| || || || || || ||||| || | | ||||
Sbjct 957669 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCTGCCATCTTGAGAACAGTCT 957610
Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038
| || | |||||||| | || ||||| | | |||| | || || ||||
Sbjct 957609 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 957559
Score = 93.3 bits (102), Expect = 6e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 71410 GCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTG 71469
||||| ||||| || || || || |||||||||||||| ||||| || |||| ||||||
Sbjct 951224 GCTAGGTCACAGCTGGCTTCCAAAGCTCCATAATAAATAGTTTCAAAGATCTGCTTATTC 951165
Query 71470 AGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 71529
| || ||||| ||||| ||||| || || | | || || || || |||||||
Sbjct 951164 AATAACTGGGCTTCTGGGCTCTCAAAGGGGTATCTCATCAGGATGAAAGCATCTGCTAGA 951105
Query 71530 CCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGA 71570
||||| || ||||| || || || | || | ||||| ||
Sbjct 951104 CCTTGTACTCCAATTCCAATGGGCCGATGGCGTTTATTGGA 951064
Score = 89.7 bits (98), Expect = 7e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||| ||||| |||||||| ||||||||||| || | || ||||| | || || |||
Sbjct 947911 ACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGC 947852
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|| || || ||||||||||| || | || |||||| | | || || | ||||| ||
Sbjct 947851 TCTTCCTTCCCTGTATTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGC 947792
Query 72142 TCCAAGTATATGGC 72155
|||| ||| || ||
Sbjct 947791 TCCAGGTAAATAGC 947778
>seq184
Length=3314118
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
||||||| || || || | || || ||||| |||||||||||||| ||||| | ||| |
Sbjct 1994076 CCTCATCCCTGCTGATGAGCTCATTTGAAAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 1994135
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| ||||||| |||||||| ||||| ||||| || ||||| || || || ||||
Sbjct 1994136 TCAGCCAGAATATAGCAGCAAATGACCCAGAGAAGAAAATGCCTTCCACGGCGGCGAAGG 1994195
Query 42207 CAATAAGTCTCTCTCC 42222
| | | |||||| ||
Sbjct 1994196 CCACCACTCTCTCCCC 1994211
>seq78
Length=6419775
Score = 100 bits (110), Expect = 4e-16
Identities = 110/145 (76%), Gaps = 5/145 (3%)
Strand=Plus/Plus
Query 41713 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTC 41768
|||| ||| || ||| |||| || | |||| ||| ||| |||| ||||| || |
Sbjct 5583561 GTTTACTTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCC 5583619
Query 41769 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATA 41828
|||| | |||||||| ||||| || || || || || || ||||||||||| | ||| |
Sbjct 5583620 CCATCCTCTGGTATTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 5583679
Query 41829 TATTTTCCATGAAATCAAACGGATT 41853
||||||||||||| ||||| |||||
Sbjct 5583680 TATTTTCCATGAAGTCAAATGGATT 5583704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670879796309960
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