Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1345 143 4e-29 seq498 100 4e-16 seq78 95.1 2e-14 seq184 87.8 3e-12 >seq1345 Length=786133 Score = 143 bits (158), Expect = 4e-29 Identities = 565/884 (64%), Gaps = 60/884 (7%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 |||||||||| || ||||| || ||| | |||||||| || | | |||||||||||||| Sbjct 220374 TTTCCCATCAAATACCATGATATCTGGCAGATGTACAAGAAAGATGAGGCCTCCTTTTGG 220433 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 |||| || ||||| || || |||||||| | | | ||||| ||| |||| Sbjct 220434 ACGGCTGAGGAGGTGGACCTTTCCAAGGATATTCAGTACTGGGAAGCTC-------TGAA 220486 Query 125118 ACTGAGCGAGAGT----TTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || || ||||| ||||| | || || ||| |||||||| | || | || Sbjct 220487 ACCCAGTGAGAGACATGTTATACCTCATGTTCGGGCTTTCTTTGCAGCAAGTGACAGCAT 220546 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTC-CAGAGGTGTCG 125231 ||||| || || || ||| || |||| ||||| ||| | | || ||||||| Sbjct 220547 AGTCAATGAGAACTTGGTGAAACTATTCAGCCAAGAAGTTCA--AGTCACAGAGGTCCGC 220604 Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || || || |||||||| || || || | || || ||||||||| | || Sbjct 220605 TGTTTCTATGGCTTCCAAATTGGCATAGAAAATATACATTCTGAAATGTACAGTCTCCTT 220664 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACAC 125350 ||||||| |||| ||| | ||| | | | ||||| || || || || | Sbjct 220665 ATTGACA----CATTAAAGATTC-CAAGGAGAGGGAGTATCTCTTCAATGCTATTGAAAA 220719 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 | |||| | ||| || |||| ||| | | | Sbjct 220720 GATGCCTTG----CGTTG-------CACTGGG-----------------GACAAAGGGGC 220751 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470 | | || | || | | ||||| || |||||||| || |||||||||||||| ||| Sbjct 220752 TACATATGGAGAATGTGTTGTGGCCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGTTC 220811 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 |||||| | || || ||||| |||||||| ||||| |||||||| || || || Sbjct 220812 TTTTGCATCAATATTCTGGCTGAAGAAGCGGGGACTTATGCCCGGCCTTACATTTTCCAA 220871 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAA 125590 ||| |||| |||| |||||| |||| |||||||||||| || |||| ||| Sbjct 220872 TGAGCTTATCAGCAGAGATGAGGGCTTACATTGTGACTTTGCCTGCCTGATGTT---CAA 220928 Query 125591 CTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAG-GTCATCAACATTGTAACCGATG 125649 | ||| || | | | ||| | | | || || | || || | | ||| Sbjct 220929 GCACCTG-GTACACA------AGCCATAGGAGCAGAGAGTAAGTAAAATAATTATGAATG 220981 Query 125650 CCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGA 125709 || |||||||||| || ||||| || || || || | || || | | || || |||| Sbjct 220982 CCATGAGGATAGAGCAGGAGTTCCTCACGGAGGCCTTGCCTGTGAAGCTTATCGGGATGA 221041 Query 125710 ACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769 || |||| || ||| ||||||| || ||||||| || | || || ||| || Sbjct 221042 ACCGCAATCTGATGAAGCAGTACATTGAATTTGTGGTGGACAGGCTGATGCTGGAGCTGG 221101 Query 125770 TTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAG 125829 |||||||| ||| | | ||| | ||||| |||||| | || ||||||| Sbjct 221102 GGTTTAACAAGATTTTCAAAGTAGAAAATTCATTTGACTTCATGGAAAATATTTCACTAG 221161 Query 125830 AGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTACAAA 125873 | | ||||| ||||| || |||||| || |||||||| || Sbjct 221162 AACGAAAGACAAACTTCTTTGAGAAGCCAGTGGGCGAGTACCAA 221205 >seq498 Length=2542268 Score = 100 bits (110), Expect = 4e-16 Identities = 544/869 (63%), Gaps = 77/869 (9%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||||||||||| || ||||| || ||| | |||||||| || || |||||||||||| Sbjct 2187188 TGTTTCCCATCAAATACCATGATATCTGGCACATGTACAAGAAAGCGGAGGCCTCCTTTT 2187129 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGA---CCTGTACGATTGGGAGACTCGTTTGA 125112 | || || ||||| || || | || | ||||| ||| Sbjct 2187128 GAAC----------------CTTTCCAAAGATATCCAGCAC--TGGGGAG-CTC------ 2187094 Query 125113 CTGAAACT---GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATG 125169 |||||| ||| || | |||||| | ||| || || ||||| || | || Sbjct 2187093 -TGAAACCCAGGAGAGACATTTTATACCTCACGTTCGTGCTTTCTTCGCAGCGAGTGACA 2187035 Query 125170 GAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTC-CAGAGGT 125227 | || ||||| || || || | ||||| ||||| ||| | | || |||||| Sbjct 2187034 GCATAGTCAATGAGAACTTGGAG---CGATTTAGCCAAGAAGTTCA--AGTCACAGAGGC 2186980 Query 125228 GTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287 || || || || |||||||| || || ||| | || || ||||||||| | Sbjct 2186979 CCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTACAGTCT 2186920 Query 125288 ACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGA 125347 || ||||||| |||||| ||| | | | | ||||| | || || || Sbjct 2186919 CCTTATTGACACCTACATTAAAGATTCTAAGGAGAGGGAGTATCTCTTCATTGCTATAGA 2186860 Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA 125407 ||| |||| ||| | || ||||| | |||| | || ||||| ||| | | Sbjct 2186859 AACGATGCCTTCTGTGAAGAAGAAGGCCGACTGGGCCTTGCGTTGGATTTGGGACAAAGA 2186800 Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 | || | ||| || | | || || || |||||||| || ||||||||||| || Sbjct 2186799 GGCTACATACAGAGAACGTGTTGTCGCCTTTGCCGCCGTGGAAGGCATCTTCTTC---GG 2186743 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 | ||| | | || || ||||||||||||| ||||| |||||||| || || Sbjct 2186742 TTCTTTCACATCAATATTCTGGCTCAAGAAGCAGGGACTGATGCCCGGCCTTACATTTTC 2186683 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCG 125587 || ||| |||| ||||||||||| ||||||||||||||||| || |||| Sbjct 2186682 CAATGAGCTTATCAGCAGAGACGAGGGCTTACACTGTGACTTTGCCTGCCTGATGTT--- 2186626 Query 125588 CAACTATCTGCGTCCCGAGTGCAGATCCAGC-GATGAAAAGGTCATCAACATTGTAACCG 125646 ||| | ||| || | | | ||| | || | | ||| | | || | | Sbjct 2186625 CAAGCACCTG-GTACACA------AGCCATCGGAGCAGAGGGTAAAAGAAATAATTGTCA 2186573 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706 | || ||||||||||| || |||| || || || || | || || | | || || | Sbjct 2186572 ACGCAGTGAGGATAGAGCAGAAGTTCCTTACGGAGGCCTTGCCTGTGAAGCTCATCGGGA 2186513 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766 ||||||||| || ||| ||||||| |||||||||||||| | || Sbjct 2186512 TGAACTGCACTCTGATGAAGCAGTACATCGAGTTTGTGGCAGACAGGCT----------- 2186464 Query 125767 TGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCAC 125826 ||||| ||| | ||||||| ||| | |||||| | || |||| Sbjct 2186463 -------------GATTTTCAAAGTAGAGAATCCATTTCACTTCATGGAAAATATTTCAC 2186417 Query 125827 TAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 |||| || ||||||| ||| || |||||| Sbjct 2186416 TAGAAGGAAAGACCAGCTTCTTTGAGAAG 2186388 >seq78 Length=6419775 Score = 95.1 bits (104), Expect = 2e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 ||||| ||||||||||| || ||||||||||| || ||| ||| || |||| || ||| Sbjct 5585684 GTGGCCTTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGTTCTTTCGCATCCATATTCTGG 5585625 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||||||||||| ||||| |||||||| || || Sbjct 5585624 CTCAAGAAGCGGGGACTGATGCCCGGCCTTAC 5585593 >seq184 Length=3314118 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || ||| ||||||| ||||||||||| || ||||| ||||| || || ||||| || Sbjct 1994208 GAGAGAGTGGTGGCCTTCGCCGCCGTGGAAGGCATTTTCTTCTCTGGGTCATTTGCTGCT 1994149 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 || || ||||| |||||| | || |||||||||||||| || Sbjct 1994148 ATATTCTGGCTGAAGAAGAGAGGCCTCATGCCCGGACTCAC 1994108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740772771355960