Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1345 143 4e-29
seq498 100 4e-16
seq78 95.1 2e-14
seq184 87.8 3e-12
>seq1345
Length=786133
Score = 143 bits (158), Expect = 4e-29
Identities = 565/884 (64%), Gaps = 60/884 (7%)
Strand=Plus/Plus
Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057
|||||||||| || ||||| || ||| | |||||||| || | | ||||||||||||||
Sbjct 220374 TTTCCCATCAAATACCATGATATCTGGCAGATGTACAAGAAAGATGAGGCCTCCTTTTGG 220433
Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117
|||| || ||||| || || |||||||| | | | ||||| ||| ||||
Sbjct 220434 ACGGCTGAGGAGGTGGACCTTTCCAAGGATATTCAGTACTGGGAAGCTC-------TGAA 220486
Query 125118 ACTGAGCGAGAGT----TTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173
|| || ||||| ||||| | || || ||| |||||||| | || | ||
Sbjct 220487 ACCCAGTGAGAGACATGTTATACCTCATGTTCGGGCTTTCTTTGCAGCAAGTGACAGCAT 220546
Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTC-CAGAGGTGTCG 125231
||||| || || || ||| || |||| ||||| ||| | | || |||||||
Sbjct 220547 AGTCAATGAGAACTTGGTGAAACTATTCAGCCAAGAAGTTCA--AGTCACAGAGGTCCGC 220604
Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291
|| || || || |||||||| || || || | || || ||||||||| | ||
Sbjct 220605 TGTTTCTATGGCTTCCAAATTGGCATAGAAAATATACATTCTGAAATGTACAGTCTCCTT 220664
Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACAC 125350
||||||| |||| ||| | ||| | | | ||||| || || || || |
Sbjct 220665 ATTGACA----CATTAAAGATTC-CAAGGAGAGGGAGTATCTCTTCAATGCTATTGAAAA 220719
Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410
| |||| | ||| || |||| ||| | | |
Sbjct 220720 GATGCCTTG----CGTTG-------CACTGGG-----------------GACAAAGGGGC 220751
Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470
| | || | || | | ||||| || |||||||| || |||||||||||||| |||
Sbjct 220752 TACATATGGAGAATGTGTTGTGGCCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGTTC 220811
Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530
|||||| | || || ||||| |||||||| ||||| |||||||| || || ||
Sbjct 220812 TTTTGCATCAATATTCTGGCTGAAGAAGCGGGGACTTATGCCCGGCCTTACATTTTCCAA 220871
Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAA 125590
||| |||| |||| |||||| |||| |||||||||||| || |||| |||
Sbjct 220872 TGAGCTTATCAGCAGAGATGAGGGCTTACATTGTGACTTTGCCTGCCTGATGTT---CAA 220928
Query 125591 CTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAG-GTCATCAACATTGTAACCGATG 125649
| ||| || | | | ||| | | | || || | || || | | |||
Sbjct 220929 GCACCTG-GTACACA------AGCCATAGGAGCAGAGAGTAAGTAAAATAATTATGAATG 220981
Query 125650 CCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGA 125709
|| |||||||||| || ||||| || || || || | || || | | || || ||||
Sbjct 220982 CCATGAGGATAGAGCAGGAGTTCCTCACGGAGGCCTTGCCTGTGAAGCTTATCGGGATGA 221041
Query 125710 ACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769
|| |||| || ||| ||||||| || ||||||| || | || || ||| ||
Sbjct 221042 ACCGCAATCTGATGAAGCAGTACATTGAATTTGTGGTGGACAGGCTGATGCTGGAGCTGG 221101
Query 125770 TTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAG 125829
|||||||| ||| | | ||| | ||||| |||||| | || |||||||
Sbjct 221102 GGTTTAACAAGATTTTCAAAGTAGAAAATTCATTTGACTTCATGGAAAATATTTCACTAG 221161
Query 125830 AGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTACAAA 125873
| | ||||| ||||| || |||||| || |||||||| ||
Sbjct 221162 AACGAAAGACAAACTTCTTTGAGAAGCCAGTGGGCGAGTACCAA 221205
>seq498
Length=2542268
Score = 100 bits (110), Expect = 4e-16
Identities = 544/869 (63%), Gaps = 77/869 (9%)
Strand=Plus/Minus
Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055
|||||||||||| || ||||| || ||| | |||||||| || || ||||||||||||
Sbjct 2187188 TGTTTCCCATCAAATACCATGATATCTGGCACATGTACAAGAAAGCGGAGGCCTCCTTTT 2187129
Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGA---CCTGTACGATTGGGAGACTCGTTTGA 125112
| || || ||||| || || | || | ||||| |||
Sbjct 2187128 GAAC----------------CTTTCCAAAGATATCCAGCAC--TGGGGAG-CTC------ 2187094
Query 125113 CTGAAACT---GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATG 125169
|||||| ||| || | |||||| | ||| || || ||||| || | ||
Sbjct 2187093 -TGAAACCCAGGAGAGACATTTTATACCTCACGTTCGTGCTTTCTTCGCAGCGAGTGACA 2187035
Query 125170 GAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTC-CAGAGGT 125227
| || ||||| || || || | ||||| ||||| ||| | | || ||||||
Sbjct 2187034 GCATAGTCAATGAGAACTTGGAG---CGATTTAGCCAAGAAGTTCA--AGTCACAGAGGC 2186980
Query 125228 GTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287
|| || || || |||||||| || || ||| | || || ||||||||| |
Sbjct 2186979 CCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTACAGTCT 2186920
Query 125288 ACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGA 125347
|| ||||||| |||||| ||| | | | | ||||| | || || ||
Sbjct 2186919 CCTTATTGACACCTACATTAAAGATTCTAAGGAGAGGGAGTATCTCTTCATTGCTATAGA 2186860
Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA 125407
||| |||| ||| | || ||||| | |||| | || ||||| ||| | |
Sbjct 2186859 AACGATGCCTTCTGTGAAGAAGAAGGCCGACTGGGCCTTGCGTTGGATTTGGGACAAAGA 2186800
Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467
| || | ||| || | | || || || |||||||| || ||||||||||| ||
Sbjct 2186799 GGCTACATACAGAGAACGTGTTGTCGCCTTTGCCGCCGTGGAAGGCATCTTCTTC---GG 2186743
Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527
| ||| | | || || ||||||||||||| ||||| |||||||| || ||
Sbjct 2186742 TTCTTTCACATCAATATTCTGGCTCAAGAAGCAGGGACTGATGCCCGGCCTTACATTTTC 2186683
Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCG 125587
|| ||| |||| ||||||||||| ||||||||||||||||| || ||||
Sbjct 2186682 CAATGAGCTTATCAGCAGAGACGAGGGCTTACACTGTGACTTTGCCTGCCTGATGTT--- 2186626
Query 125588 CAACTATCTGCGTCCCGAGTGCAGATCCAGC-GATGAAAAGGTCATCAACATTGTAACCG 125646
||| | ||| || | | | ||| | || | | ||| | | || | |
Sbjct 2186625 CAAGCACCTG-GTACACA------AGCCATCGGAGCAGAGGGTAAAAGAAATAATTGTCA 2186573
Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706
| || ||||||||||| || |||| || || || || | || || | | || || |
Sbjct 2186572 ACGCAGTGAGGATAGAGCAGAAGTTCCTTACGGAGGCCTTGCCTGTGAAGCTCATCGGGA 2186513
Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766
||||||||| || ||| ||||||| |||||||||||||| | ||
Sbjct 2186512 TGAACTGCACTCTGATGAAGCAGTACATCGAGTTTGTGGCAGACAGGCT----------- 2186464
Query 125767 TGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCAC 125826
||||| ||| | ||||||| ||| | |||||| | || ||||
Sbjct 2186463 -------------GATTTTCAAAGTAGAGAATCCATTTCACTTCATGGAAAATATTTCAC 2186417
Query 125827 TAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
|||| || ||||||| ||| || ||||||
Sbjct 2186416 TAGAAGGAAAGACCAGCTTCTTTGAGAAG 2186388
>seq78
Length=6419775
Score = 95.1 bits (104), Expect = 2e-14
Identities = 76/92 (83%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489
||||| ||||||||||| || ||||||||||| || ||| ||| || |||| || |||
Sbjct 5585684 GTGGCCTTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGTTCTTTCGCATCCATATTCTGG 5585625
Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521
||||||||||| ||||| |||||||| || ||
Sbjct 5585624 CTCAAGAAGCGGGGACTGATGCCCGGCCTTAC 5585593
>seq184
Length=3314118
Score = 87.8 bits (96), Expect = 3e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480
|| ||| ||||||| ||||||||||| || ||||| ||||| || || ||||| ||
Sbjct 1994208 GAGAGAGTGGTGGCCTTCGCCGCCGTGGAAGGCATTTTCTTCTCTGGGTCATTTGCTGCT 1994149
Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521
|| || ||||| |||||| | || |||||||||||||| ||
Sbjct 1994148 ATATTCTGGCTGAAGAAGAGAGGCCTCATGCCCGGACTCAC 1994108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740772771355960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |