Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1345 233 2e-56 seq184 93.3 4e-14 >seq1345 Length=786133 Score = 233 bits (258), Expect = 2e-56 Identities = 578/870 (66%), Gaps = 44/870 (5%) Strand=Plus/Minus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||| || |||| ||| || ||||| |||||||| |||| ||||| ||||||||||| Sbjct 221205 TTGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTC 221146 Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGTAT-TTTTTACACCCTAATTCTAGTAACA 12980 ||| || || ||| || ||||| | | || || ||| |||| | || || | || Sbjct 221145 CATGAAGTC-AAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCATCA 221087 Query 12981 ATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 13040 ||||| | ||||| || |||||||| ||||| | || | |||||| || || | | Sbjct 221086 GCCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCT 221027 Query 13041 TTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGT 13100 | ||||||| || || || | || | | ||||| | || | |||| ||| | Sbjct 221026 TCACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTATTT 220967 Query 13101 CTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAAT 13160 |||| | | ||| |||| | | || ||||| ||||||| || ||||| | Sbjct 220966 TACTTACTCTCTGCTCCTATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGT 220907 Query 13161 CACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAA 13220 |||| || || || |||||||| || || ||||| || |||||||| || || ||||||| Sbjct 220906 CACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATAA 220847 Query 13221 GCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAA 13280 | || || || || | ||| ||||| | ||||| ||||| ||||| || || ||||| | Sbjct 220846 GTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCA 220787 Query 13281 CTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTATCCACTTT 13339 | || ||||| || | |||| | ||| ||||| | || || |||| Sbjct 220786 CGGCGGCAAAGGCCA-CAACACATTCTCCATA----------------TGTAGCCCCTTT 220744 Query 13340 CTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAA 13399 | ||||| ||| |||||| ||| ||||| || || || || | ||| Sbjct 220743 GT-CCCCAG--TGC---------AACGCAAGGCATCTTTTCAATAGCATTGAAGAGATAC 220696 Query 13400 tttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGA 13459 | | ||||| ||| ||| || || || | | || |||||||| ||||| Sbjct 220695 TCCCTCTCCTTGGAATCTTTAAT----GTGTCAATAAGGAGACTGTACATTTCAGAATGT 220640 Query 13460 ATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCG 13519 |||||||| || | |||||||| ||||| ||||| | |||||| || |||||||| Sbjct 220639 ATATTTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTCT 220580 Query 13520 GAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCA 13579 | ||| || | ||||| || || ||||| | |||||| || ||||| ||||| Sbjct 220579 TGGCTGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGCC 220520 Query 13580 AGTATGTGCTTAATAA-Attttttt---tCGTTTTCTGACAACTTTAACCAATCTGGAAA 13635 | | || |||| || | | | | | |||| | | ||| ||| | ||| Sbjct 220519 CGAACATGAGGTATAACATGTCTCTCACTGGGTTTC--AGAGCTT--CCCAGTACTGAAT 220464 Query 13636 ATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695 ||| || || | || ||||||||| | |||||||| || || || | ||||| ||||| Sbjct 220463 ATCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACAT 220404 Query 13696 CATCCATATATCCTTATAAACAATGGGAAA 13725 | ||| ||||| | || |||||||| Sbjct 220403 CTGCCAGATATCATGGTATTTGATGGGAAA 220374 >seq184 Length=3314118 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 12970 TTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCAT 13029 ||||| | ||| |||||||| |||||||| |||||||||||||| ||| |||||||||| Sbjct 1987780 TTCTACAAGCAACCTGTCAGCTACAAACTCAATGTACTGTTTCATCAAAACACAGTTCAT 1987839 Query 13030 TCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065 || || | ||||||| |||||||||||||| Sbjct 1987840 CCCAATGAGGCCGACAGGCAAGGCTTCTGTTAAAAA 1987875 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || |||||||| |||||||| ||||| |||||| Sbjct 1986884 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 1986943 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| || ||||||| Sbjct 1986944 ATAAAATCAAAGGGATTTT 1986962 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||| || || || ||||| |||||||| || || || ||||| || |||| || || Sbjct 1994078 TCATCCCTGCTGATGAGCTCATTTGAAAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 1994137 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 | ||| |||||||||||||| || || || || || || ||||| || || || || || Sbjct 1994138 AGCCAGAATATAGCAGCAAATGACCCAGAGAAGAAAATGCCTTCCACGGCGGCGAAGGC 1994196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430819984417242