Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq1345 233 2e-56
seq184 93.3 4e-14
>seq1345
Length=786133
Score = 233 bits (258), Expect = 2e-56
Identities = 578/870 (66%), Gaps = 44/870 (5%)
Strand=Plus/Minus
Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921
||| || |||| ||| || ||||| |||||||| |||| ||||| |||||||||||
Sbjct 221205 TTGGTACTCGCCCACTGGCTTCTCAAAGAAGTTTGTCTTTCGTTCTAGTGAAATATTTTC 221146
Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGTAT-TTTTTACACCCTAATTCTAGTAACA 12980
||| || || ||| || ||||| | | || || ||| |||| | || || | ||
Sbjct 221145 CATGAAGTC-AAATGAATTTTCTACTTTGAAAATCTTGTTAAACCCCAGCTCCAGCATCA 221087
Query 12981 ATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 13040
||||| | ||||| || |||||||| ||||| | || | |||||| || || | |
Sbjct 221086 GCCTGTCCACCACAAATTCAATGTACTGCTTCATCAGATTGCGGTTCATCCCGATAAGCT 221027
Query 13041 TTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGT 13100
| ||||||| || || || | || | | ||||| | || | |||| ||| |
Sbjct 221026 TCACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCTCATGGCATTCATAATTATTT 220967
Query 13101 CTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAAT 13160
|||| | | ||| |||| | | || ||||| ||||||| || ||||| |
Sbjct 220966 TACTTACTCTCTGCTCCTATGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGT 220907
Query 13161 CACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAA 13220
|||| || || || |||||||| || || ||||| || |||||||| || || |||||||
Sbjct 220906 CACAATGTAAGCCCTCATCTCTGCTGATAAGCTCATTGGAAAATGTAAGGCCGGGCATAA 220847
Query 13221 GCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAA 13280
| || || || || | ||| ||||| | ||||| ||||| ||||| || || ||||| |
Sbjct 220846 GTCCCCGCTTCTTCAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCA 220787
Query 13281 CTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTATCCACTTT 13339
| || ||||| || | |||| | ||| ||||| | || || ||||
Sbjct 220786 CGGCGGCAAAGGCCA-CAACACATTCTCCATA----------------TGTAGCCCCTTT 220744
Query 13340 CTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAA 13399
| ||||| ||| |||||| ||| ||||| || || || || | |||
Sbjct 220743 GT-CCCCAG--TGC---------AACGCAAGGCATCTTTTCAATAGCATTGAAGAGATAC 220696
Query 13400 tttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGA 13459
| | ||||| ||| ||| || || || | | || |||||||| |||||
Sbjct 220695 TCCCTCTCCTTGGAATCTTTAAT----GTGTCAATAAGGAGACTGTACATTTCAGAATGT 220640
Query 13460 ATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCG 13519
|||||||| || | |||||||| ||||| ||||| | |||||| || ||||||||
Sbjct 220639 ATATTTTCTATGCCAATTTGGAAGCCATAGAAACAGCGGACCTCTGTGACTTGAACTTCT 220580
Query 13520 GAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCA 13579
| ||| || | ||||| || || ||||| | |||||| || ||||| |||||
Sbjct 220579 TGGCTGAATAGTTTCACCAAGTTCTCATTGACTATGCTGTCACTTGCTGCAAAGAAAGCC 220520
Query 13580 AGTATGTGCTTAATAA-Attttttt---tCGTTTTCTGACAACTTTAACCAATCTGGAAA 13635
| | || |||| || | | | | | |||| | | ||| ||| | |||
Sbjct 220519 CGAACATGAGGTATAACATGTCTCTCACTGGGTTTC--AGAGCTT--CCCAGTACTGAAT 220464
Query 13636 ATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695
||| || || | || ||||||||| | |||||||| || || || | ||||| |||||
Sbjct 220463 ATCCTTGGAAAGGTCCACCTCCTCAGCCGTCCAAAAGGAGGCCTCATCTTTCTTGTACAT 220404
Query 13696 CATCCATATATCCTTATAAACAATGGGAAA 13725
| ||| ||||| | || ||||||||
Sbjct 220403 CTGCCAGATATCATGGTATTTGATGGGAAA 220374
>seq184
Length=3314118
Score = 93.3 bits (102), Expect = 4e-14
Identities = 78/96 (81%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 12970 TTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCAT 13029
||||| | ||| |||||||| |||||||| |||||||||||||| ||| ||||||||||
Sbjct 1987780 TTCTACAAGCAACCTGTCAGCTACAAACTCAATGTACTGTTTCATCAAAACACAGTTCAT 1987839
Query 13030 TCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065
|| || | ||||||| ||||||||||||||
Sbjct 1987840 CCCAATGAGGCCGACAGGCAAGGCTTCTGTTAAAAA 1987875
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922
||||| || ||||| ||| ||||| || |||||||| |||||||| ||||| ||||||
Sbjct 1986884 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 1986943
Query 12923 ATAAAATCGAAAGGATTTT 12941
|||||||| || |||||||
Sbjct 1986944 ATAAAATCAAAGGGATTTT 1986962
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234
||||| || || || ||||| |||||||| || || || ||||| || |||| || ||
Sbjct 1994078 TCATCCCTGCTGATGAGCTCATTTGAAAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 1994137
Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293
| ||| |||||||||||||| || || || || || || ||||| || || || || ||
Sbjct 1994138 AGCCAGAATATAGCAGCAAATGACCCAGAGAAGAAAATGCCTTCCACGGCGGCGAAGGC 1994196
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430819984417242
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |